PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882515.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 282aa    MW: 32365.6 Da    PI: 5.9421
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882515.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-125421048
                     HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +ll+++v+++G + W+ Ia+++  gR +kqc++rw+++l
   XP_015882515.1  5 QLLIQLVEEYGVRKWSHIAQMLA-GRIGKQCRERWHNHL 42
                     89*********************.*************97 PP
2Myb_DNA-binding57.92.4e-185090345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      W++eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
   XP_015882515.1 50 IWSEEEDKILIEAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 90
                     6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.557142IPR017930Myb domain
SMARTSM007175.6E-7444IPR001005SANT/Myb domain
CDDcd001675.61E-11442No hitNo description
Gene3DG3DSA:1.10.10.601.5E-21547IPR009057Homeodomain-like
PfamPF002491.4E-11542IPR001005SANT/Myb domain
SuperFamilySSF466892.16E-2822101IPR009057Homeodomain-like
PROSITE profilePS5129425.8934397IPR017930Myb domain
SMARTSM007175.9E-174795IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-224896IPR009057Homeodomain-like
CDDcd001672.74E-135193No hitNo description
PfamPF002494.8E-175190IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MYLIQLLIQL VEEYGVRKWS HIAQMLAGRI GKQCRERWHN HLRPDIKKDI WSEEEDKILI  60
EAHAEIGNKW AEIAKRLPGR TENSIKNHWN ATKRRQYSKR KCRSKYPRGS LLQDYIKSLN  120
LDSSSNKGGR YQRKTTTTTT TSSTSIDIRT KAPETDQQNS LEFCPNNRLV PSCYGNFDED  180
PDEFCFDENI FQEGCAIESL LDDMPAACAP DLDAGIKFPF HPSTLEDNNF SGKITGDIDQ  240
KNCDTEMPEM DGVVAPVMKS EVLMKKEMDL VEMISKVHEA DK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-4059613104C-Myb DNA-Binding Domain
1msf_C3e-4059613104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882515.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882515.10.0transcription factor MYB98-like
SwissprotQ9S7L24e-81MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A314UZK01e-111A0A314UZK0_PRUYE; Transcription factor MYB98-like
STRINGEMJ123431e-111(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-77myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]