PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882192.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 324aa    MW: 36418.7 Da    PI: 4.9187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.4e-06202246655
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +++ r RR++i ++ +eL +l+P  +      K++ ae+ + A +Y+k Lq
  XP_015882192.1 202 SIAARERRRKITEKTQELGKLIPGgN------KMNTAEMFQSASKYVKFLQ 246
                     67889******************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.833196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.33E-8199250No hitNo description
SuperFamilySSF474599.68E-11199254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-10200253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-4202246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-8202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAALSFCSNW GSSTFQNLNP EMMISSSLSQ SQPELLASHF FGLDYNLSLP DTCIDPLFDT  60
NNNDSFWSDN NYTHLNFLSN FHSQPDNNFL SHQTENFPLH DELFESSCYY FPKRQKMSYE  120
SHLHMNNNNT NSTSPSFFDG FVPNPGLVSE LLPEVVFGQV HDESPILQPS CHGYGSSGNN  180
KEMNSTGTTM KKTSSGGLSA QSIAARERRR KITEKTQELG KLIPGGNKMN TAEMFQSASK  240
YVKFLQSQVS ILQFMGSIQE TKEEALHVQG LEILASQTIQ EKLYTEEKCL VPMEFVRLLA  300
NDPEIRSGPF IKEIDQLIMP TNGC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015882192.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882192.20.0transcription factor bHLH52-like
RefseqXP_024922975.10.0transcription factor bHLH52-like
STRINGPOPTR_0001s46530.18e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-29bHLH family protein