PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881660.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 414aa    MW: 45301.3 Da    PI: 8.2409
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1277.6e-40164239277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqv+gC+ dl+ ak+yhrrh++Ce+hsk+p+v+v+g+e+rfCqqCsrfhelsefD +krsCrrrL++hn+rrr++ 
  XP_015881660.1 164 CQVQGCNLDLKLAKDYHRRHRICEIHSKSPKVIVAGMERRFCQQCSRFHELSEFDGKKRSCRRRLSDHNARRRRRP 239
                     **********************************************************************999864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.9E-34157225IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.992161238IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.37E-36162240IPR004333Transcription factor, SBP-box
PfamPF031106.6E-32164237IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MTNWNSISAL EWEREWEKLA GFSPKAIDIL KQGQPSNSDI EGVGGIDNRS VYSCEGDGGF  60
SSCELGHASS SKSSFWASAF GEFRNGFIVE KDLTCGVDIS GNVACLGASQ SYGEPKPTIG  120
FKLGKRTYYE GFCSASSANA PSISVAPKRR SSRASYQTAH TPHCQVQGCN LDLKLAKDYH  180
RRHRICEIHS KSPKVIVAGM ERRFCQQCSR FHELSEFDGK KRSCRRRLSD HNARRRRRPQ  240
PETIQIDCSS RLYSSLLYDR RQQRNLVANW VPSSTANPTW QSSCSFKAKQ GGKDCSDRLH  300
DFPTSTGEMV NAPSSIVVTD PRAIEGLGTS AFYPGLDGAP DFGCALSLLS TDNDNTLGLN  360
NSETNSSVEM QLMQVNQSSS GSSSSGGGAV QFWLRLITSS CWSSNQLKDG GVSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271642371184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219237KKRSCRRRLSDHNARRRRR
2226237RLSDHNARRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015881660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024929434.10.0squamosa promoter-binding-like protein 3
TrEMBLA0A2I6SET71e-113A0A2I6SET7_9ROSI; SBP-box transcription factor
STRINGVIT_11s0065g00170.t011e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-50squamosa promoter binding protein-like 2