PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015880601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 487aa MW: 53621.9 Da PI: 6.8356 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.6 | 1.7e-16 | 346 | 391 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksL XP_015880601.1 346 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSL 391 6*************************8.....6****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-20 | 340 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.559 | 342 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.53E-17 | 345 | 396 | No hit | No description |
Pfam | PF00010 | 6.4E-14 | 346 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-20 | 346 | 400 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-18 | 348 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0009693 | Biological Process | ethylene biosynthetic process | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MLFDILSVWS AMNHCIPDWN FEGIQPVINQ KKPAGPENEL VELLWRNGQV VLQSQTQRKP 60 SFNPTDQPRQ IHKHDQEGIR AGGSFGNSSN LIHDDEAVSW IQYPLEDSFE KEFCSNFFTE 120 LPSCDPSDVE TPPIRQFGEE PKTKPTNNGV PFPENQMPPP RFHYNSSQQN QNLSGLEKMV 180 NLPQIPDAAK GGDLRSSSGQ FGGKDSGGFA QGEVREGSVV TVGLSHCGSN QLLGELDVSR 240 VSSNGDGTTG LSAGHSKEDV QKKHMAQSDR GKTEPSTEPV TSSSGGSGSS FGRTCKQSKG 300 GGNQKRKSRD VEESECQSGA GELESAAANK PSQRSGSTRR SRAAEVHNLS ERRRRDRINE 360 KMKALQELIP HCNKTDKASM LDEAIEYLKS LKLQLQVMWM GSGMAPMMFP GVQHYISRMN 420 MGMGPSALPS MHNPMHLTRV PLVDQSVAVS STTNQPVVCQ TPVLNPINFQ NQMQNASFPE 480 QYARFFF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 350 | 355 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00082 | ChIP-seq | Transfer from AT3G59060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015880601.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024928698.1 | 0.0 | transcription factor PIF4 | ||||
TrEMBL | A0A2P6S0J7 | 0.0 | A0A2P6S0J7_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004303901.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8146 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.4 | 1e-67 | phytochrome interacting factor 3-like 6 |