PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880587.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family G2-like
Protein Properties Length: 235aa    MW: 26893 Da    PI: 6.9623
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880587.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.31.1e-301871255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    prlrWtp+LH+ Fveave LGG++kAtPk+il++m+vkgL ++hvkSHLQ+YR+
  XP_015880587.1 18 PRLRWTPQLHQLFVEAVEGLGGKNKATPKRILQTMSVKGLKISHVKSHLQMYRS 71
                    8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.1561474IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-281571IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-231872IPR006447Myb domain, plants
SuperFamilySSF466893.76E-141871IPR009057Homeodomain-like
PfamPF002491.9E-71970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MKTSQRIGVR QYNKSEFPRL RWTPQLHQLF VEAVEGLGGK NKATPKRILQ TMSVKGLKIS  60
HVKSHLQMYR SGKDHDQNDV LVPTKHFSRK HLHHIHFADN LGVLSNIFSP LRLQENGLVC  120
QRSDALEHEH EILQTKEETS CEQHQALVFL EESTSLGNRM ATEEETSGAG PLNEFCELSL  180
SFNTPPLTQC VEEREFWVSN DNHSTSQSSS TDNFSSSDFH SHQRRNHIIN LDLTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015880587.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880587.11e-175putative Myb family transcription factor At1g14600
RefseqXP_015880621.11e-175putative Myb family transcription factor At1g14600
TrEMBLA0A2P5EVY78e-57A0A2P5EVY7_TREOI; Octamer-binding transcription factor
STRINGXP_008229586.12e-50(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91862839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.15e-26G2-like family protein