PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015880531.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 306aa MW: 33146.5 Da PI: 7.84

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015880531.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.3	1.8e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+ XP_015880531.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA 98 6******************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_015880531.1 99 AVEAVLKGT 107 9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	7.2E-98	1	303	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.097	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGTPIT PINSEAAANS 120 HGPPLKAYDI RHVSKDENSA ASNDHQKVKT RCRFKRSAVV KPKPRKSGGF RSVSDSACCE 180 AANPKWASYC TVTDELNRST SHESSVSHQS EAVNVDGESK ETESMISVET AEASLFRTEP 240 ELAPKSDEPV QEGELALELT LSLEPVSRAH HVVPVKKRRI EASGSVGGST ADDGACKMEL 300 GLEYPA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015880531.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015880531.1	0.0	LOB domain-containing protein 41
Swissprot	Q9M886	1e-109	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	W9RUX7	1e-170	W9RUX7_9ROSA; Uncharacterized protein
STRING	XP_010103788.1	1e-171	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-105	LOB domain-containing protein 41