PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015880191.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 295aa MW: 32819.1 Da PI: 7.3191

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015880191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	209	251	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq XP_015880191.1 209 AAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAIGYVKFLQ 251 569*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-13	199	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-12	200	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.894	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.57E-11	203	255	No hit	No description
SMART	SM00353	8.4E-11	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-6	211	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAVAKDRIPQ VSSASFPSDQ FHKPGVQEVA HSVINFKNGY STATSTGVIN TTSLLSFEQT 60 HERANSQNCN YLKPNSTSHK DVDHYSNWDD HHNYEWNNHH HHHQVINPRI SGELNCFQTA 120 SDYGSVDNST AAGKDFQNQH GGDGSYGWLY SESTISADSF EESATHEASR IHKRHQMGES 180 TQGHKKQCTS ATKMTKPKSS PSKDPQSVAA KNRRERISER LKILQELVPN GSKVDLVTML 240 EKAIGYVKFL QLQVKVLATD ELWPAQGGKA LDISQVKEAI DAILSSQRDR TSSSE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015880191.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015880191.1	0.0	putative transcription factor bHLH086
Swissprot	Q9FJ00	2e-64	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A2P5E794	8e-97	A0A2P5E794_TREOI; Basic helix-loop-helix transcription factor
STRING	VIT_14s0006g01470.t01	7e-94	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	7e-58	RHD SIX-LIKE 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]