PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015879359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | WRKY | ||||||||
Protein Properties | Length: 513aa MW: 55574.8 Da PI: 7.8001 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.2 | 4.5e-30 | 219 | 278 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+ ed +++++tYeg+Hnh+ XP_015879359.1 219 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCVEDMSILITTYEGTHNHP 278 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-31 | 205 | 280 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-27 | 213 | 280 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.323 | 214 | 280 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-36 | 219 | 279 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 220 | 278 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MPNSGGGIEE KRVESVHHHA GNCSPEVRKV ELQNAKAEMS EVREENERLK MMLQNIEKDY 60 KSLQLRFFDI FNREAASKKP TDSAPDHHHH DVEETEEPQL VSLSLGIKSP VESKKDENST 120 SSSLSKNNVD DNEDLRANLT LGLGTTRKQV SSKLTVSDPS PTNSSEAHQA PGAGDALQPS 180 SKRTSTSKTM RNGDDEISQQ AHAKRARVSV RAKCDTPTMN DGCQWRKYGQ KIAKGNPCPR 240 AYYRCTVAPA CPVRKQVQRC VEDMSILITT YEGTHNHPLP ISATAMASTT SAAASMLLSG 300 SSTSSQTPTL TANAAVPTTS LLHNINGTNF GLFDNLRTKP YYLPNPSSPL FPTVTLDLAS 360 SPSFSSSPHF NRLSSTFASP SRIPSSSPSF YSSEPNILPP VWGNGYLIGK QSSPQEYFYQ 420 AKQHCVEKNS NQAYAQEALT ESLTKAITSD PSFKSVIAAA ISSMVGESES QVKQGGGLER 480 FGQRLATWPG DHQAVAEAVV SQSPLTQNGK GCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-21 | 219 | 280 | 17 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-21 | 219 | 280 | 17 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015879359.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015879359.1 | 0.0 | probable WRKY transcription factor 72 | ||||
TrEMBL | A0A2P5AFU5 | 1e-158 | A0A2P5AFU5_PARAD; WRKY domain containing protein | ||||
STRING | EOY03394 | 1e-157 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 9e-91 | WRKY DNA-binding protein 72 |