PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015877983.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Trihelix

Protein Properties

Length: 1037aa MW: 116072 Da PI: 7.3034

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015877983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.1	5.3e-09	253	311	22	81
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 r+k ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y XP_015877983.1 253 TRSKTRAEKDKEVAEFLQRQGINRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 311 3577889999**************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	5.71E-16	874	1019	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	4.6E-6	877	983	No hit	No description
CDD	cd00180	4.97E-14	882	1019	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1037 aa Download sequence Send to blast
MGDNKGDTSK KQQTQQQQQQ QQQQQISSSP KDPLDESTET RPIILHQQQQ QPPPPPPAVV 60 VVTGAPAFYV PSGATSSSPF EQQQFESVNP KRPRYTTTTG QWKLLPSPSS QQKQTPTQIT 120 SIHTTEQSSP SPTANPTNNP PPTTTTTAQP QHLLHSTAAS SSDTASSPSH SPLPSLSAAS 180 GQDTNKSEGE NPVHHHHQFR KGKYVSPVWK PNEMLWLARA WRIQYQGSVG SGDGSGSSSL 240 RTEHHHTDLG TQTRSKTRAE KDKEVAEFLQ RQGINRDAKT AGTKWDNMLG EFRKVYEWER 300 GGEREQVGKS YFRLSPYERK LHRLPASFDE EVFEELSQFM GSRMRSTPQG RGGSAIVEAA 360 RILPAPPSFK DDELHLSASA GRTKQLMMSS SGGEPSYHGG RPSSLLGFES SSMDVGGPSP 420 LLSSSKELRR IGKIRMIWEE SVSLWGEEGE HHRGRVRLQG SSFLNADELT YFDDGMVACT 480 MEAFEDGPLR GFSVDRFVSG QQVKVFGRRK SSFYSAATTS SGFSEKIQLP LTEPSIIRSF 540 PPWEFQDPTE YYVGCLRVPP QSLPSLFELS WYLQEPPSEE LRFPLRKDVY RDLPQGKELF 600 LTTSSEMLDC RSITYDILSP IIRINPSITT STATSRDSFI GLWDDCINRI VSKFCSVEMV 660 TIRKPTSTSP SEPLQDQWPN VTGFVRNFCL WRGEEVDQLR EGHVDPSSSL VEKLLWTYVD 720 LPYILGYYAV GYVVTFCALS RIQDRIIRTD LHTVDLSSPS ERIKALVPCY RIAGLLPLLA 780 DRCLNNINNN GGGGGGSSSF KMLPYSDFER IDAGSGEVIE MTPNTVTRYF SNRRKWTAVK 840 EIYDFLDHRI PHAEFIHRSS EKDLALVFKP RGCKFKPSNF DQLVEALKYV TKALVALHDL 900 SFMHRDLSWD KVMRRCDREN EWFVCGFDEA VSAPQIYPSH PMMMGMGGDG ETEATMARGR 960 RAPEMERGLH GVKVDVWGVG HLVRSCGLAG MPKMLRELQK RCLDQNPEQR PTAADCYHHL 1020 LQLQSSLSVS SAAGVLI

Sequence ? help Back to Top

Protein Sequence Length: 1037 aa Download sequence Send to blast

MGDNKGDTSK KQQTQQQQQQ QQQQQISSSP KDPLDESTET RPIILHQQQQ QPPPPPPAVV  60
VVTGAPAFYV PSGATSSSPF EQQQFESVNP KRPRYTTTTG QWKLLPSPSS QQKQTPTQIT  120
SIHTTEQSSP SPTANPTNNP PPTTTTTAQP QHLLHSTAAS SSDTASSPSH SPLPSLSAAS  180
GQDTNKSEGE NPVHHHHQFR KGKYVSPVWK PNEMLWLARA WRIQYQGSVG SGDGSGSSSL  240
RTEHHHTDLG TQTRSKTRAE KDKEVAEFLQ RQGINRDAKT AGTKWDNMLG EFRKVYEWER  300
GGEREQVGKS YFRLSPYERK LHRLPASFDE EVFEELSQFM GSRMRSTPQG RGGSAIVEAA  360
RILPAPPSFK DDELHLSASA GRTKQLMMSS SGGEPSYHGG RPSSLLGFES SSMDVGGPSP  420
LLSSSKELRR IGKIRMIWEE SVSLWGEEGE HHRGRVRLQG SSFLNADELT YFDDGMVACT  480
MEAFEDGPLR GFSVDRFVSG QQVKVFGRRK SSFYSAATTS SGFSEKIQLP LTEPSIIRSF  540
PPWEFQDPTE YYVGCLRVPP QSLPSLFELS WYLQEPPSEE LRFPLRKDVY RDLPQGKELF  600
LTTSSEMLDC RSITYDILSP IIRINPSITT STATSRDSFI GLWDDCINRI VSKFCSVEMV  660
TIRKPTSTSP SEPLQDQWPN VTGFVRNFCL WRGEEVDQLR EGHVDPSSSL VEKLLWTYVD  720
LPYILGYYAV GYVVTFCALS RIQDRIIRTD LHTVDLSSPS ERIKALVPCY RIAGLLPLLA  780
DRCLNNINNN GGGGGGSSSF KMLPYSDFER IDAGSGEVIE MTPNTVTRYF SNRRKWTAVK  840
EIYDFLDHRI PHAEFIHRSS EKDLALVFKP RGCKFKPSNF DQLVEALKYV TKALVALHDL  900
SFMHRDLSWD KVMRRCDREN EWFVCGFDEA VSAPQIYPSH PMMMGMGGDG ETEATMARGR  960
RAPEMERGLH GVKVDVWGVG HLVRSCGLAG MPKMLRELQK RCLDQNPEQR PTAADCYHHL  1020
LQLQSSLSVS SAAGVLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015877983.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015877983.1	0.0	uncharacterized protein LOC107414384
TrEMBL	F6HAQ5	0.0	F6HAQ5_VITVI; Uncharacterized protein
STRING	VIT_16s0022g02290.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-07	Trihelix family protein