PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877683.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 348aa    MW: 37681.6 Da    PI: 9.7738
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877683.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-1499144247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ +++ + k+lG+g+W+ I++ + ++Rt+ q+ s+ qky
   XP_015877683.1  99 KPWTEEEHRIFLAGLKELGKGDWRGISKNFVTTRTPTQVASHAQKY 144
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.23193149IPR017930Myb domain
SuperFamilySSF466898.28E-1795149IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1696147IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.4E-1297143IPR009057Homeodomain-like
SMARTSM007172.9E-1297147IPR001005SANT/Myb domain
PfamPF002494.4E-1299144IPR001005SANT/Myb domain
CDDcd001673.42E-10100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVKESARKCS HCGHNGHNSR TCNLDNGKGP VCLKLFGVTI EKQHEESLKK SLSMGNLTAY  60
CADHNNHSSA GDSHESGYLS DGLIHNSRHK AAHERKKGKP WTEEEHRIFL AGLKELGKGD  120
WRGISKNFVT TRTPTQVASH AQKYFLRLQA ANDKKKRRSS LFDMTFQDSD ITSHDLPVVS  180
AVEKATENNS KASSSSQVLP VKNTVDNPAL AITPAQIMNQ FPHLCLDSPR VVVPIAAPSS  240
GFPSYQAMPF AVRVPSDLPI IPMVNFGRQN YSYVPINPGR FATCGPVIAH PSGIPSPRSL  300
PTSPYDHIHE GRGVSSAQKD GLELKIGPPK APQGSKLSSP ASGAISVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877683.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877683.10.0probable transcription factor At5g61620
TrEMBLA0A314XXJ01e-124A0A314XXJ0_PRUYE; Transcription factor MYB1R1 isoform X1
STRINGXP_008376361.11e-132(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-73MYB_related family protein