PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015877177.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 232aa MW: 25442.1 Da PI: 7.6124

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015877177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.1	4.8e-41	77	176	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf n+h++FGasn++k+l+++pe++r da+ss+vyeA+ar+rdPvyG+ + + +lq+q+++l+a+la XP_015877177.1 77 PCAACKILRRRCVDKCVLAPYFPPTDPLKFTNAHRVFGASNIIKFLQEIPESQRADAVSSMVYEANARIRDPVYGCENKVCNLQKQISELQAQLA 171 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_015877177.1 172 KAQAE 176 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.51	76	177	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-41	77	174	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEFNRKSSPT ATLTPPRITI PTPFSYSSPS SNSPSPTTSP QYSPTAIPSP SHQSAPMTVK 60 GLASPPPPPS PPVVVSPCAA CKILRRRCVD KCVLAPYFPP TDPLKFTNAH RVFGASNIIK 120 FLQEIPESQR ADAVSSMVYE ANARIRDPVY GCENKVCNLQ KQISELQAQL AKAQAELVNM 180 QCQQTNLIAL ICMDMTQSSQ ELPNLPQQVP WVDTTCFLDD NVLGNSWEPL WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-43	69	188	3	122	LOB family transfactor Ramosa2.1
5ly0_B	3e-43	69	188	3	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015877177.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	7e-31	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	7e-31	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015877177.1	1e-169	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-70	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2P5CTH4	2e-95	A0A2P5CTH4_TREOI; Lateral organ boundaries domain containing protein
STRING	XP_010108453.1	5e-94	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-59	LOB domain-containing protein 1