![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015877177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25442.1 Da PI: 7.6124 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.1 | 4.8e-41 | 77 | 176 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf n+h++FGasn++k+l+++pe++r da+ss+vyeA+ar+rdPvyG+ + + +lq+q+++l+a+la XP_015877177.1 77 PCAACKILRRRCVDKCVLAPYFPPTDPLKFTNAHRVFGASNIIKFLQEIPESQRADAVSSMVYEANARIRDPVYGCENKVCNLQKQISELQAQLA 171 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_015877177.1 172 KAQAE 176 *9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.51 | 76 | 177 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-41 | 77 | 174 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MEFNRKSSPT ATLTPPRITI PTPFSYSSPS SNSPSPTTSP QYSPTAIPSP SHQSAPMTVK 60 GLASPPPPPS PPVVVSPCAA CKILRRRCVD KCVLAPYFPP TDPLKFTNAH RVFGASNIIK 120 FLQEIPESQR ADAVSSMVYE ANARIRDPVY GCENKVCNLQ KQISELQAQL AKAQAELVNM 180 QCQQTNLIAL ICMDMTQSSQ ELPNLPQQVP WVDTTCFLDD NVLGNSWEPL WT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-43 | 69 | 188 | 3 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-43 | 69 | 188 | 3 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015877177.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 7e-31 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 7e-31 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015877177.1 | 1e-169 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-70 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2P5CTH4 | 2e-95 | A0A2P5CTH4_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_010108453.1 | 5e-94 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-59 | LOB domain-containing protein 1 |