PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015875937.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 648aa MW: 74236.4 Da PI: 6.9379

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015875937.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.8	3.6e-13	55	119	1	68
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 +fY +YAke+GFsvr s++k+ k +e+++++fvC keg ++ ++ + ++ r tr +Ckakl + XP_015875937.1 55 EFYIKYAKEAGFSVRSSSTKRCKGAEEVVWKEFVCFKEGVSSIKDGE---RKMCRGMTRENCKAKLAM 119 6***************************************99877...889999******9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-11	55	119	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-32	216	309	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MSVEQLEANS DCRQVEDISL LSHSKSVDDV YIPQVAENCK PKVGQKFESI DGAHEFYIKY 60 AKEAGFSVRS SSTKRCKGAE EVVWKEFVCF KEGVSSIKDG ERKMCRGMTR ENCKAKLAMF 120 SAANVPTHQQ ISILEFEAGG IENIGCTKKD IYNHEAKVWN ELRGQDAELL KEYFLTEQEK 180 DPCFFFKIDV DDDGKLKRCF WADSVSRRAY GCFGDVVVFD TTYNTNQYGM IFAPLVGVNN 240 HGQTVLFACA FLSDEKTESF VWLFELLKDS MPTNNPKMII TDQDPTMTKA IVQSLPNTFH 300 RYCSWHILEK FSNYLNVITY RDFYKDFQQC IWESECPEKF ERKWVTTIEK ASLDNNDWLK 360 SIFELCLRWV PAYVNHIFSA GMSSSQRAES SHSFFKKYIS KRNLLMDFIL RFNRAFAHQR 420 HEELGADHVD INEKLVLKLP LEMEEQMAEI YTCKIFLKFQ DELWNSLVIM PQFVCENTTH 480 KMYVVKSSPK ERVRRVREIA YDKELDFASC TFIDKAIIYE EASVIVNDGL QSLLGKIESI 540 VSNTKSGGIS EKGSTAHDYE ALKDPSAVRA KGCGQRLKRR KEKATNAAKY RGRCCNGCGK 600 IGQSHDKRNC PLLNNPSSQN EESPQHASEY DSKADSLSST GLHEKMKG

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MSVEQLEANS DCRQVEDISL LSHSKSVDDV YIPQVAENCK PKVGQKFESI DGAHEFYIKY  60
AKEAGFSVRS SSTKRCKGAE EVVWKEFVCF KEGVSSIKDG ERKMCRGMTR ENCKAKLAMF  120
SAANVPTHQQ ISILEFEAGG IENIGCTKKD IYNHEAKVWN ELRGQDAELL KEYFLTEQEK  180
DPCFFFKIDV DDDGKLKRCF WADSVSRRAY GCFGDVVVFD TTYNTNQYGM IFAPLVGVNN  240
HGQTVLFACA FLSDEKTESF VWLFELLKDS MPTNNPKMII TDQDPTMTKA IVQSLPNTFH  300
RYCSWHILEK FSNYLNVITY RDFYKDFQQC IWESECPEKF ERKWVTTIEK ASLDNNDWLK  360
SIFELCLRWV PAYVNHIFSA GMSSSQRAES SHSFFKKYIS KRNLLMDFIL RFNRAFAHQR  420
HEELGADHVD INEKLVLKLP LEMEEQMAEI YTCKIFLKFQ DELWNSLVIM PQFVCENTTH  480
KMYVVKSSPK ERVRRVREIA YDKELDFASC TFIDKAIIYE EASVIVNDGL QSLLGKIESI  540
VSNTKSGGIS EKGSTAHDYE ALKDPSAVRA KGCGQRLKRR KEKATNAAKY RGRCCNGCGK  600
IGQSHDKRNC PLLNNPSSQN EESPQHASEY DSKADSLSST GLHEKMKG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015875937.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875937.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	V4URE3	1e-177	V4URE3_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006428864.1	1e-178	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14110	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-81	FAR1-related sequence 5