PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015874808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 729aa MW: 77782 Da PI: 5.845 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.3e-16 | 465 | 511 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq XP_015874808.1 465 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 511 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.58E-17 | 457 | 515 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-20 | 458 | 522 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-20 | 458 | 519 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 461 | 510 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 465 | 511 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-17 | 467 | 516 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 729 aa Download sequence Send to blast |
MPLSELYRMA KGKLDSNQDF EIGNDIFELV WENGQVTMQG QSSRAKKGPS CNSLPSHCLP 60 SYNLKTRDKD IGNGTISRTG KFGTVGSGLD EIPMSVPSAE MGLNQDDDMM PWLNYPIEES 120 LQHDYCPDFL PELSGVTVNE LSAADNFACV DRRSSCNQVY RDSNTNPVHG DGSLEQRNVS 180 KVASVGGGEV SRPRPGSSQL CPSSSSQQCQ TSFPSLRSRV SDIVGDNTSS VAHQAVCRDS 240 PRVPSPGGFP SKKMQKLDAV PPGSTPAIMN FSHFSRPAAL VKANLQNIGA TTGSALPSMH 300 RVTNKEKGAA ASSNNPPESA PNSSSVGLRK ETSSPCQNVA SNVDLKPSDA MPVEEPFAAK 360 QSEAVCQEDA SKNDTNSNQL FCESAVRGFP DGERTAEPVV ASSSVCSGNS VERVSDDPTH 420 LLKRKCRDTE DSECHSEDAD EESVGVKKIA AARASGSKRS RAAEVHNLSE RRRRDRINEK 480 MRALQELIPN CNKVDKASML DEAIEYLKTL QLQVQIMSMG AGLYMPPMML PTGMQHMHAP 540 HMAHFSPMGV GMGMGLSMGF GMGMPDMNGG SSGYPMIQVP SMQGAHFPGP PMSGHTAFHG 600 MTGSNLQMFG LHGQGLPMPM QRPPLVPMTG GPFMKSAVGP NVCGASGPME NVESAPPSTS 660 TDPVQNMSSQ VMQNPGANSS MNQTSSQCQP TTERFEQSTL VQNNVQAPDV NGGRAEGNDL 720 VPSGAASYD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 469 | 474 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015874808.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015874808.1 | 0.0 | transcription factor PIF3 isoform X1 | ||||
TrEMBL | A0A2P5DRB8 | 0.0 | A0A2P5DRB8_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | EMJ08410 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-59 | phytochrome interacting factor 3 |