PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873555.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 359aa    MW: 40688.1 Da    PI: 6.6022
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.9e-36511432103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+  ++         weF++++Fkkg k+ll++
  XP_015873555.1  51 FLTKTYQLVDDPRTDHIVSWGEDESTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIVADR---------WEFANEYFKKGAKHLLTE 136
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_015873555.1 137 IHRRKTS 143
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-3842134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.2E-5747140IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.0E-3348140IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-3151140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-195174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434090114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-19102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MRDCAGRGLD VEEEEDQEEV EMGFIVQERS CSTEENMVFS VESQKAVPAP FLTKTYQLVD  60
DPRTDHIVSW GEDESTFVVW RPPEFARDLL PNYFKHNNFS SFVRQLNTYG FKKIVADRWE  120
FANEYFKKGA KHLLTEIHRR KTSQQQHHHY SQLHFHQDHH HQQSHFSQPS HADNNNLHET  180
TTTLGWIQST TPLLPSPKPS SAGNTDILTA LTEDNQRLRR KNFMLLSELT HMKSLYNDII  240
FFIQNHVKPA LSYDQQRITT SSTTSATNNI NGGGAAKLIE LGSSFQERSN FVNSGVVRRS  300
CGPAGNNNNK TCSGVSVDEE GNGGSTVKLF GVSLSGKKRM HPEPLDQQEP PLGWTVSVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-214714317123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873555.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9931554e-58JX993155.1 Astragalus camptodontus microsatellite De010 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873555.10.0heat stress transcription factor B-4d-like
SwissprotQ9C6355e-88HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2N9FXJ31e-122A0A2N9FXJ3_FAGSY; Uncharacterized protein
STRINGXP_010088963.11e-122(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-77heat shock transcription factor B4