PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015870430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRF | ||||||||
Protein Properties | Length: 603aa MW: 64648.8 Da PI: 7.9348 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.1 | 1.7e-24 | 214 | 257 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e XP_015870430.1 214 DPEPGRCKRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKHVE 257 79****************************************98 PP | |||||||
2 | QLQ | 59.3 | 1.1e-20 | 152 | 185 | 2 | 35 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT+aQ+ +L++Q+++yKy++a++PvPp+Ll++i XP_015870430.1 152 PFTNAQWKELERQAMIYKYMVASVPVPPDLLLPI 185 8*******************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.0E-12 | 151 | 187 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.126 | 152 | 187 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-14 | 152 | 185 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.586 | 214 | 258 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.9E-20 | 215 | 257 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 603 aa Download sequence Send to blast |
MRMEKFCVSD KEAKRNIYNK IGDDLEISAK VHSNSISSST ESLPACNSTM RMLHHDNHYR 60 PPSSSSSLRG LGGGDLGPTC NRAPAGPDDI YDVVVVSNAG SHAAAVASAA VSGDAVVRPL 120 QPFDISTTSP STSSPTTAFK FSGGMAATLG FPFTNAQWKE LERQAMIYKY MVASVPVPPD 180 LLLPINTRNL SAPAASQYSL GSDFSLRLSN NNTDPEPGRC KRTDGKKWRC SRDVAPDQKY 240 CERHMHRGRP RSRKHVEVHV NNNNKRTRHD HHHHHALPTT SSATMAVTNP TVNNNINGSH 300 TQFIGPTSAL PYHQSPVFLD KSTIKASTFD SSLSSEKVST RNLDWMMKAE PAAMTASDPQ 360 WHQLMQTKME LSSKTTSYCD TSNSSVFNQH SEEVPFLNLN SYSNFNTGQD QHESDQCSLF 420 LNPEVVSLEN QTPAVHAVPV APRSFIDAWS NSTIADKSCV SSSAKLSPSS LTLSMGGCNS 480 INEEMSRTHQ IGSGYNVNHS KTHVTSWLTP ASWVAPQPGG PLAEVLRPSS LTGSTTSAVS 540 NPSSPVNNGK GGDSSCSPVA TTVSSPSGVL QKTLASLSDS SGSSSPTVVG CSSSNAKVEI 600 ALL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015870430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870430.1 | 0.0 | growth-regulating factor 8-like | ||||
Refseq | XP_015870521.1 | 0.0 | growth-regulating factor 8-like | ||||
Refseq | XP_015870685.1 | 0.0 | growth-regulating factor 8-like | ||||
Refseq | XP_015871945.1 | 0.0 | growth-regulating factor 8-like | ||||
TrEMBL | A0A251QPM7 | 0.0 | A0A251QPM7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008234659.1 | 1e-180 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 6e-37 | growth-regulating factor 7 |