PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015870356.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | WRKY | ||||||||
Protein Properties | Length: 625aa MW: 67519.5 Da PI: 7.9731 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.7 | 3.3e-30 | 275 | 334 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+ XP_015870356.1 275 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCADDMSILTTTYEGTHNHP 334 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-31 | 260 | 336 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-27 | 268 | 336 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.875 | 270 | 336 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-36 | 275 | 335 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-27 | 276 | 334 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MVTNDFLIQL IFVSDHLIVL KIEHGGAKQK ITDDITPSSP KQQDLISCIK QVPSNTTGIE 60 SSSMERDSMV SSSSRKEQDE QLVSTRAEMG EVREENQRLK MYLDRIMKDY QTLQMQFYGI 120 VQHEAKKSTT TSEAISKNHQ QETDQEAELI SLRLGSFSSI TNYYPKKDEK NKASSDHGKE 180 TSSTTDHQVE EGLALGLDCK FEPSKSSGAT DQGPLSNPSP ASSFEETNKE EARETWPPPN 240 KSLTAKRSTD DEVSQQSPAK KARVSVRARC DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR 300 CTVAPSCPVR KQVQRCADDM SILTTTYEGT HNHPLPISAT AMASTTSAAA SMLLSASTTS 360 SSRSVLNPLS ATTTPADLHG LNFYLSGNSN LKQFYLPNAP LSSTSHPTIT LDLTSNPSSS 420 SLFNKFSPNY PPLYSSSTSL NFGSSESNLM SWSNNGFLSY GTSNSQPYNN SRTQIGNLSL 480 GRQSGTSTST MQQQNNVFQN FLQKNGNNAV PHNPRPQGSI LLPQQALPDS LAAATKAITA 540 DPSFQSALAA ALSTIIGTQG NHGGGGGGSY VQTTKGNNGC ASSYLNRTTS NLQPGNSMFA 600 SSSSLPFSNS KSGSASSGDH REQTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-19 | 262 | 336 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015870356.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870356.1 | 0.0 | probable WRKY transcription factor 61 | ||||
Swissprot | A0A3Q7GFB5 | 1e-118 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A061G420 | 0.0 | A0A061G420_THECC; WRKY DNA-binding protein 72, putative | ||||
STRING | XP_009369334.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | EOY21754 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 2e-81 | WRKY DNA-binding protein 72 |
Publications ? help Back to Top | |||
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