PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015869952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 511aa MW: 57267.4 Da PI: 8.4025 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.8e-07 | 383 | 430 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E lvd++ ++G g+W+ I r + Rt+ +++++w+++l XP_015869952.1 383 WTLTEVMNLVDGISEYGVGRWTDIKRLLFaasAYRTPIDLRDKWRNLL 430 ********************************99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 372 | 434 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.093 | 375 | 434 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.42E-15 | 377 | 453 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-7 | 379 | 432 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.88E-17 | 381 | 431 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MDREAHLRKK FSNAKSQRVK TDESLTPALE DETVEHLLAE PKNENVSVDG VLYFGEQNAG 60 KCLGIEDFSC EFEYGLNPYR GGLHSSTARE EEDDLALGVL DGLLDEVDEV EDLHATDGLA 120 SPCEDFLLDI DFAGKVSVLA PGLCQGSHSR NPSSESQSPG LSGSSNSAIG ISDSSTVTVQ 180 DFEYKNDSLN KTEKHGLQAA VRRKKRCRTP LQGTCLDSQD FKEFDDDENP LLSDLLLSNQ 240 KGKSSIEACK VGSFLREKRL RKPTQRYIEE FSNKKSKYLK GRGKFSSGDA VTANDKGLKM 300 RSHGDLHNVR PKTLSAVSEE ELLSGTKIQE VPLVRGKRGR PKKHVSVPQI EPDEEHFTSE 360 SEDDSVTKRR CKSHDRRKHQ RMWTLTEVMN LVDGISEYGV GRWTDIKRLL FAASAYRTPI 420 DLRDKWRNLL RASCAHKLKK KEMEERQGHA VRPLPKSLLR RVRELAKIHP YPRERGVKSI 480 GEDDPSTLPT SSKGAPLSVG RKNNVRRKNC T |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015869952.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015869952.1 | 0.0 | uncharacterized protein LOC107407213 | ||||
TrEMBL | W9S527 | 0.0 | W9S527_9ROSA; Telomere repeat-binding protein 4 | ||||
STRING | XP_010107511.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4716 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-23 | TRF-like 6 |