PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869840.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 382aa    MW: 42966.7 Da    PI: 10.5173
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.2e-07254301448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E   lvd++ ++G g+W+ I r +      Rt+ +++++w+++l
   XP_015869840.1 254 WTLTEVMNLVDGISEYGVGRWTDIKRLLFaasAYRTPIDLRDKWRNLL 301
                      ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-11243305IPR009057Homeodomain-like
PROSITE profilePS5129413.093246305IPR017930Myb domain
SuperFamilySSF466891.42E-15248327IPR009057Homeodomain-like
SMARTSM007175.8E-7250303IPR001005SANT/Myb domain
CDDcd116603.74E-17252302No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
IDFAGKVSVL APGLCQGSHS RNPSSESQSP GLSGSSNSAI GISDSSTVTV QDFEYKNDSL  60
NKTEKHGLQA AVRRKKRCRT PLQGTCLDSQ DFKEFDDDEN PLLSDLLLSN QKGKGSIEAC  120
KVGSFLREKR LRKPTQRYIE EFSNKKSKYL KGRGKFSSGD AVTANDKGLK MRSHGDLHNV  180
RPKTLSAVSE EELLSGTKIQ EVPLVRGKRG RPKKHVSVPQ IEPDEEHFTS ESEDDSVTKR  240
RCKSHDRRKH QRMWTLTEVM NLVDGISEYG VGRWTDIKRL LFAASAYRTP IDLRDKWRNL  300
LRASCAHKLK KKEMEERQGH AVRPLPKSLL RRVRELAKIH PYPRERGVKS IGEDDPSTLP  360
TSSKGAPLSV GRKNNVRRKN CT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015869840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869840.20.0uncharacterized protein LOC107407122
TrEMBLW9S5271e-130W9S527_9ROSA; Telomere repeat-binding protein 4
STRINGXP_010107511.11e-131(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.24e-24TRF-like 6