PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015867675.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 345aa MW: 39641.6 Da PI: 4.4649

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015867675.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.5e-12	177	220	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L XP_015867675.1 177 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 220 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.95E-16	175	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	177	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-11	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.73E-4	178	224	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-15	178	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00132	271	312	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MELNEHFLEE LLALRRESSW ETNNISTEMN EIFSNVWGFD YYDQNLVSSS INPSSSCCQE 60 FSPPLEPQNF NNNYYFKEVY CPLIDEFSAP HFTDSSYNNT LDDNTPTLPI QEDYPLSKME 120 EEELGILGDE IHNLETQASC KTEPVQSPDQ IPIFNMGISL ERKNRAKKIQ GQPSKNLMAE 180 RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYMKEL LERINNLQQE IEEAGSNNLN 240 MMGLFKDVKP NHELLVRNTP KFDVERRNVD TRVEICCSGK PGLLFSTLTT LEALGLEIQQ 300 CVISCFNDFA MQASCSEDLE QRTVISPEDI KEALFRNAGY GGRCL

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MELNEHFLEE LLALRRESSW ETNNISTEMN EIFSNVWGFD YYDQNLVSSS INPSSSCCQE  60
FSPPLEPQNF NNNYYFKEVY CPLIDEFSAP HFTDSSYNNT LDDNTPTLPI QEDYPLSKME  120
EEELGILGDE IHNLETQASC KTEPVQSPDQ IPIFNMGISL ERKNRAKKIQ GQPSKNLMAE  180
RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYMKEL LERINNLQQE IEEAGSNNLN  240
MMGLFKDVKP NHELLVRNTP KFDVERRNVD TRVEICCSGK PGLLFSTLTT LEALGLEIQQ  300
CVISCFNDFA MQASCSEDLE QRTVISPEDI KEALFRNAGY GGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	186	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015867675.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867675.1	0.0	transcription factor bHLH93-like
Swissprot	Q9LSL1	2e-83	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A061FF70	1e-164	A0A061FF70_THECC; Beta HLH protein 93
STRING	EOY15558	1e-165	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1186	34	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-85	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]