PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015867233.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRF | ||||||||
Protein Properties | Length: 609aa MW: 65333.4 Da PI: 7.9348 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.1 | 1.7e-24 | 214 | 257 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e XP_015867233.1 214 DPEPGRCKRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKHVE 257 79****************************************98 PP | |||||||
2 | QLQ | 59.3 | 1.1e-20 | 152 | 185 | 2 | 35 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT+aQ+ +L++Q+++yKy++a++PvPp+Ll++i XP_015867233.1 152 PFTNAQWKELERQAMIYKYMVASVPVPPDLLLPI 185 8*******************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.0E-12 | 151 | 187 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.126 | 152 | 187 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-14 | 152 | 185 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.586 | 214 | 258 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.0E-20 | 215 | 257 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MRMEKFCVSD KEAKRNIYNK IGDDLEISAK VHSNSISSST ESLPACNSTM RMLHHDNHYR 60 PPSSSSSLRG LGGGDLGPTC NRAPAGPDDI YDVVVVSNAG SHAAAVASAA VSGDAVVRPL 120 QPFDISTTSP STSSPTTAFK FSGGMAATLG FPFTNAQWKE LERQAMIYKY MVASVPVPPD 180 LLLPINTRNL SAPAASQYSL GSDFSLRLSN NNTDPEPGRC KRTDGKKWRC SRDVAPDQKY 240 CERHMHRGRP RSRKHVEVHV NNNNNNNNNN KRTRHDHHHH HALPTTSSAT MAVTNPTVNN 300 NINGSHTQFI GPTSALPYHQ SPVFLDKSTI KASTFDSSLS SEKVSTRNLD WMMKAEPAAM 360 TASDPQWHQL MQTKMELSSK TTSYCDTSNS SVFNQHSEEV PFLNLNSYSN FNTGQDQHES 420 DQCSLFLNPE VVSLENQTPA VHAVPVAPRS FIDAWSNSTI ADKSCVSSSA KLSPSSLTLS 480 MGGCNSINEE MSRTHQIGSG YNVNHSKTHV TSWLTPASWV APQPGGPLAE VLRPSSLTGS 540 TTSAVSNPSS PVNNGKGGDS SCSPVATTVS SPSGVLQKTL ASLSDSSGSS SPTVVGCSSS 600 NAKVEIALL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015867233.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015867233.1 | 0.0 | growth-regulating factor 8-like | ||||
TrEMBL | A0A251QPM7 | 1e-178 | A0A251QPM7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008234659.1 | 1e-177 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 6e-37 | growth-regulating factor 7 |