PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866622.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 682aa    MW: 74950.5 Da    PI: 7.5678
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-06267287526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ GtC+  d C +aHg
  XP_015866622.1 267 PCPEFRK-GTCPKADACEYAHG 287
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.89E-1622149IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-1622171IPR020683Ankyrin repeat-containing domain
SMARTSM0024844002353IPR002110Ankyrin repeat
PfamPF127963.3E-966137IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00370100IPR002110Ankyrin repeat
PROSITE profilePS5029713.94770150IPR020683Ankyrin repeat-containing domain
CDDcd002046.31E-1272148No hitNo description
SMARTSM002480.0018105137IPR002110Ankyrin repeat
PROSITE profilePS500889.591105140IPR002110Ankyrin repeat
SMARTSM003569.4E-5262288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671262289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4267289IPR000571Zinc finger, CCCH-type
SMARTSM0035623297320IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.981297321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MCRGSKSKLS PSNLGMENEF QKQKCSVLLE LSASDNIEAF RYEVEEKGLN VDEPSFWYGR  60
RFGSKKMGFE ERTPLMIAAM FGNTKVLKYI IGSDKVDVNR SCGSDRVTAL HCATSGGSSS  120
SLEIVKLLLD ASADPNCVSA NGNKPVDLIV PGFKSTSYSR KAMEMLLTGN SSYVEDEQVF  180
TQEGDQLKVG SPQLSKEGTE KKEYPIDISL PDINNGIYGS DEFRMFSFKI KPCSRAYSHD  240
WTECPFVHPG ENARRRDPKK YPYSCVPCPE FRKGTCPKAD ACEYAHGVFE SWLHPAQYRT  300
RLCKDETGCA RKVCFFAHRP EELRPVYAST GSAMPSPRST AVSAAEMSTM SPITLGPSSF  360
SLPATSTPPM SPLAAASSSP KNGSLWQNKV TLTPPALQLP GSRLKSALSA RDFDLGMELL  420
GLDNQQKQQQ QQQQLLDEIS RLSSPSCWNK DVSRIGELKP TNLDDVFGSL DPSMLPQMQG  480
MSLKPSTPTQ LQSPNGLQIR QNLNQLRSSY PTNLSSSPVR KPSSYGLDSS ASAVAAALMN  540
SRSAAFAKRS QSFIDRGAVA HLQGLTAAAN SATMMSSNLS DWSSPDGKLD WGIQGDELNK  600
LKKSASFGFR NNNTGMRTTT MTSAADEPDV SWVNSLVKDV PSDRSELFDS EKQQRYHLSK  660
GVHDILPPWV EQMYIEQEQM VA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866622.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866622.10.0zinc finger CCCH domain-containing protein 29-like isoform X2
RefseqXP_024924319.10.0zinc finger CCCH domain-containing protein 29-like isoform X1
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLM5XIS20.0M5XIS2_PRUPE; Uncharacterized protein
STRINGEMJ214130.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein