PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013899957.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Dof

Protein Properties

Length: 968aa MW: 95867.5 Da PI: 7.1384

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013899957.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	95.5	3.8e-30	2	51	13	62
zf-Dof 13 stntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 s++tkfCyynny+++qPr++Ck+C+ryWt+GG lrn+PvG+grrk+k+++ XP_013899957.1 2 SADTKFCYYNNYNVKQPRFYCKGCQRYWTAGGELRNLPVGAGRRKSKNRE 51 89********************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	22.871	1	49	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-18	2	48	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-24	2	49	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010214	Biological Process	seed coat development
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence Send to blast
MSADTKFCYY NNYNVKQPRF YCKGCQRYWT AGGELRNLPV GAGRRKSKNR EKAAQQQQQM 60 ARAKAQVKQQ QQQQQQQQQQ LRQGPQHEPL SEGPGSEEGD EGAPAAPGPP APQQRKQAPR 120 QRRKRAPAAR PQHEEGGGVE EEQGQQREQQ QDASRAGERD GDAQESGAEP HLAAAAAAAA 180 AAAAAAAASQ QPWAGMGGAC LPGPSGDDPS MAAAAAAAAA AAAAGSDPYA SYRQLTAMLD 240 PLGAYAAMAG GGGGAAAAAA AAAAAAAAAA GWQGVGAGYP FAGMGGFGQS PYGLPSFGPG 300 MESAAAAAAA AAAAAAAGQQ HAAHGGHSGG RSAGGGGPER RHSGGSGSGG VYAPVASVGA 360 VALPDSSGAD QPSGSELRGR QRQHQQQQQQ HREVERQRHG AGRSGAPGSP ATSLGQAGGA 420 EPDGSSGGRR VRPKVEGGAH ASGAAASAGR VGDPTPLQDG LHPVEAIHVD STLAQQQQQQ 480 QQQPLPRSDL HEAAADQQQQ QQQQQQAEPT ASEQQRLSTT DALNSLVAAA TNGGAAMDRW 540 LQQAAQQQWG ASIAAAAAAA AVSAPSDSSL VPLQQAAAAA ALQAQVQQAQ AAAQAQAQAQ 600 AQAAAQAQAA AQAQAQAQAQ AAALAGQALS GWGSGGQAAI AYWQQLMPYL QQQQAPQQQQ 660 QQQQQAQDAA MGWLAQAAAS GFSPRPSWPG AWPGVSSLDP TAVALGALVA HVMQQAQLPP 720 SQQASQQQAA PQPAAPLPQP QPQPAPSSPL QPGAAQQQQQ QQQQQQQQQQ QQQQHALLQN 780 ALRGGTAAEG GAPASWWVPS DRPGPSNGAA AEPPSAPQGP APAPWPAAWP DPWAGQLPPG 840 GAGGGPDASA AAAAAAAAAA FAASQYAPGG AAGAYGGGMG ALAASMGMMM DPAALLNASA 900 GLSAFGYGSI PGAAAAAAAA AAAAAAAAHE SGGGGGGGVA GGGTFRVPRP KPSGLSGGSS 960 IGTGTPGR

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence Send to blast

MSADTKFCYY NNYNVKQPRF YCKGCQRYWT AGGELRNLPV GAGRRKSKNR EKAAQQQQQM  60
ARAKAQVKQQ QQQQQQQQQQ LRQGPQHEPL SEGPGSEEGD EGAPAAPGPP APQQRKQAPR  120
QRRKRAPAAR PQHEEGGGVE EEQGQQREQQ QDASRAGERD GDAQESGAEP HLAAAAAAAA  180
AAAAAAAASQ QPWAGMGGAC LPGPSGDDPS MAAAAAAAAA AAAAGSDPYA SYRQLTAMLD  240
PLGAYAAMAG GGGGAAAAAA AAAAAAAAAA GWQGVGAGYP FAGMGGFGQS PYGLPSFGPG  300
MESAAAAAAA AAAAAAAGQQ HAAHGGHSGG RSAGGGGPER RHSGGSGSGG VYAPVASVGA  360
VALPDSSGAD QPSGSELRGR QRQHQQQQQQ HREVERQRHG AGRSGAPGSP ATSLGQAGGA  420
EPDGSSGGRR VRPKVEGGAH ASGAAASAGR VGDPTPLQDG LHPVEAIHVD STLAQQQQQQ  480
QQQPLPRSDL HEAAADQQQQ QQQQQQAEPT ASEQQRLSTT DALNSLVAAA TNGGAAMDRW  540
LQQAAQQQWG ASIAAAAAAA AVSAPSDSSL VPLQQAAAAA ALQAQVQQAQ AAAQAQAQAQ  600
AQAAAQAQAA AQAQAQAQAQ AAALAGQALS GWGSGGQAAI AYWQQLMPYL QQQQAPQQQQ  660
QQQQQAQDAA MGWLAQAAAS GFSPRPSWPG AWPGVSSLDP TAVALGALVA HVMQQAQLPP  720
SQQASQQQAA PQPAAPLPQP QPQPAPSSPL QPGAAQQQQQ QQQQQQQQQQ QQQQHALLQN  780
ALRGGTAAEG GAPASWWVPS DRPGPSNGAA AEPPSAPQGP APAPWPAAWP DPWAGQLPPG  840
GAGGGPDASA AAAAAAAAAA FAASQYAPGG AAGAYGGGMG ALAASMGMMM DPAALLNASA  900
GLSAFGYGSI PGAAAAAAAA AAAAAAAAHE SGGGGGGGVA GGGTFRVPRP KPSGLSGGSS  960
IGTGTPGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	328	336	GGRSAGGGG
2	930	943	SGGGGGGGVAGGGT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00223	DAP	Transfer from AT1G69570	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013899957.1	0.0	Dof zinc finger protein DOF1.5
TrEMBL	A0A0D2JP66	0.0	A0A0D2JP66_9CHLO; Dof zinc finger protein DOF1.5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4655	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	3e-23	Dof family protein

Link Out ? help Back to Top
Entrez Gene	25739902

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]