PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635294.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 321aa    MW: 36006.1 Da    PI: 7.5662
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-13146192455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  XP_013635294.1 146 DHILAERKRREKLTQRFVALSALIPGL-----KKMDKASVLGDAIKHIKYLQ 192
                     5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.44142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-17146211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-17146208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.48E-13147196No hitNo description
SMARTSM003533.2E-15148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MATTMNVFST KWSSEMDTEE YSIIHQSHMN SFLGDFPQSL SLDDTTTSYN FDASCDDDLV  60
EEKPSKILKT TQVLPKLHPY PSYNPPPQSQ PSSRILSFEK TGLKVMNHNS PNLIFSPKQE  120
AGSPDLIARG TKRAQPLARS HSNAQDHILA ERKRREKLTQ RFVALSALIP GLKKMDKASV  180
LGDAIKHIKY LQESVKEYEE QKKERTMESM VLVKKSQLVL YENHQLSSSS SEGNRDCSSS  240
NLPEMEVKVS GKDVLIKILC EKQKSNLIKI MAEIERLGLS ITNSSVLPFG PTFDISIIAQ  300
KTSDFDMKVE DVVKSLSCCL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-13146202864Transcription factor MYC2
5gnj_B4e-13146202864Transcription factor MYC2
5gnj_E4e-13146202864Transcription factor MYC2
5gnj_F4e-13146202864Transcription factor MYC2
5gnj_G4e-13146202864Transcription factor MYC2
5gnj_I4e-13146202864Transcription factor MYC2
5gnj_M4e-13146202864Transcription factor MYC2
5gnj_N4e-13146202864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155ERKRRE
2151156RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00273DAPTransfer from AT2G22750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635294.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4465490.0DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
GenBankDQ6530150.0DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635294.10.0PREDICTED: transcription factor bHLH18
SwissprotQ1PF171e-141BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A0D3C1A60.0A0A0D3C1A6_BRAOL; Uncharacterized protein
STRINGBo4g150960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-140bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]