PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626311.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 180aa    MW: 19769.2 Da    PI: 5.9294
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-06433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++ fC  ++  lC+ C ++ H
  XP_013626311.1  4 LCDACENAAAIVFCAADEAALCRPCDEKVH 33
                    6*******9******************998 PP
2zf-B_box26.71.1e-085291237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                    ++++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  XP_013626311.1 52 NAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91
                    789***************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.224147IPR000315B-box-type zinc finger
CDDcd000211.68E-6345No hitNo description
SMARTSM003361.5E-7447IPR000315B-box-type zinc finger
PfamPF006433.0E-5442IPR000315B-box-type zinc finger
SMARTSM003362.2E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9165196IPR000315B-box-type zinc finger
PfamPF006431.7E-65291IPR000315B-box-type zinc finger
CDDcd000211.51E-75696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRILCDACEN AAAIVFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDRPKQ NNARDNMQNQ  120
RVSASANGEA NGKTDDEMID LNANPQRVHE PSSNNQGIDV NNTNNHEPAG VGPFKRESEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626311.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937280.0AB493728.1 Arabidopsis thaliana At4g38960 mRNA for hypothetical protein, partial cds, clone: RAAt4g38960.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626311.11e-131PREDICTED: B-box zinc finger protein 19 isoform X1
RefseqXP_013700763.11e-131B-box zinc finger protein 19 isoform X1
RefseqXP_022560408.11e-131B-box zinc finger protein 19 isoform X1
SwissprotC0SVM51e-123BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A078FFV41e-130A0A078FFV4_BRANA; BnaC03g60270D protein
TrEMBLA0A0D3BJB21e-130A0A0D3BJB2_BRAOL; Uncharacterized protein
STRINGBo3g149680.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-126DBB family protein