PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 276aa MW: 30091.1 Da PI: 5.4427

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013626007.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.8	1.1e-17	79	128	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a ++++g XP_013626007.1 79 NYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVASLAIKG 128 69**998.******843...6******************9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.34E-33	78	138	No hit	No description
Pfam	PF00847	2.9E-12	78	128	IPR001471	AP2/ERF domain
SMART	SM00380	9.2E-38	79	142	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.21E-21	79	136	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.879	79	136	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.0E-31	79	137	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-10	80	91	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-10	102	118	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MGTIEKSVSQ VTLTSSAIFT VSSSSSAAAS FSSSTTSSSS SSTTYNSKRK ASPRSSEDQE 60 DDDNVVKRRK ISGGDKHPNY RGVRMRSWGK WVSEIREPRK KSRIWLGTYP TAEMAARAHD 120 VASLAIKGTT AHLNFPELSG ELPRPVTRSP KDIQAAATAA AVNWQDSGAN SLRMNNSDVA 180 ELAETEPSRG VMAQSLSGSV VFSSDINTRD LSETSCASTT SFADKDKEEE KLFDLPDLVT 240 DEIIRNDAFS FYSSTWQLCG ADHGFRLEEP FFCLND

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-17	74	137	9	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	69	KRKASPRSSEDQEDDDNVVKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013626007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189399	0.0	AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013626007.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF034-like isoform X1
Refseq	XP_013680873.1	0.0	ethylene-responsive transcription factor ERF034 isoform X1
Swissprot	Q8LBQ7	1e-112	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A0D3B6S3	0.0	A0A0D3B6S3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6A9J9	0.0	A0A3P6A9J9_BRAOL; Uncharacterized protein
STRING	Bo3g037480.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	1e-107	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]