PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625495.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 346aa    MW: 38879.5 Da    PI: 4.5333
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625495.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.11.2e-4761341129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtd elv +yLk+kv gkk+ + ++i+evdiyk+eP dLp k ++++++ +wyfF++r kky++g ++nr+t+sgyWk+tgkd++v+
  XP_013625495.1   6 LAPGFRFHPTDVELVRYYLKRKVLGKKFMT-NAIAEVDIYKFEPPDLPeKsCLRTGDLKWYFFCPRLKKYPNGGKANRSTESGYWKTTGKDRDVT 99 
                     579************************988.89**************95357788889************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       ++e+vg  +tL+f+ g++p+ge+tdWvmheyrle
  XP_013625495.1 100 Y-NDEVVGKIRTLIFHYGKTPRGERTDWVMHEYRLE 134
                     *.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-563156IPR003441NAC domain
PROSITE profilePS5100554.0936156IPR003441NAC domain
PfamPF023651.3E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGKNSLAPGF RFHPTDVELV RYYLKRKVLG KKFMTNAIAE VDIYKFEPPD LPEKSCLRTG  60
DLKWYFFCPR LKKYPNGGKA NRSTESGYWK TTGKDRDVTY NDEVVGKIRT LIFHYGKTPR  120
GERTDWVMHE YRLEDRTLEQ RNIPQDTYVI CKLFKKNGLG PRHGSEYGAP FKDEDWSDEE  180
DIESLDPGPS KETSGVASAS HSHRPEDCIT GVISESCVVS DVPQLTAATV LLPPLASDVV  240
AHTPLPSSPP PLLEVPHAVQ DDDDFYSMLD LFVVDNEESL HLDGLNNQFE VRHETEVPAV  300
EEAPVCLEDV DMSWIQDLSD ELFIGIEELI EPSTPPAAQG GHPGDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-45515716166NO APICAL MERISTEM PROTEIN
1ut4_B4e-45515716166NO APICAL MERISTEM PROTEIN
1ut7_A4e-45515716166NO APICAL MERISTEM PROTEIN
1ut7_B4e-45515716166NO APICAL MERISTEM PROTEIN
4dul_A4e-45515716166NAC domain-containing protein 19
4dul_B4e-45515716166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625495.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382770.0KF738277.1 Brassica napus NAC transcription factor 103 (NAC103.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302893.10.0NAC domain-containing protein 82-like
RefseqXP_013625495.10.0PREDICTED: NAC domain-containing protein 82
RefseqXP_013642966.10.0NAC domain-containing protein 82-like isoform X1
SwissprotQ9FY821e-119NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A078D5T20.0A0A078D5T2_BRANA; NAC transcription factor 103
TrEMBLA0A0D3BF790.0A0A0D3BF79_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BBT70.0A0A3P6BBT7_BRAOL; Uncharacterized protein
STRINGBo3g101690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-134NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]