PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013624815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 291aa MW: 32608.8 Da PI: 10.9367 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.1 | 1.4e-16 | 224 | 275 | 7 | 58 |
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r++kNRe+A rsR+RK+a+++eLe kv+ L+aeN +Lk + ++lkk +a+ XP_013624815.1 224 HKRMIKNRESAARSRARKQAYTDELELKVAHLKAENARLKRQQDQLKKAAAN 275 69**********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.3E-12 | 214 | 282 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.266 | 220 | 271 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.06E-11 | 222 | 272 | No hit | No description |
Pfam | PF00170 | 4.0E-14 | 222 | 275 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 8.76E-25 | 222 | 276 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 8.6E-15 | 223 | 274 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 225 | 240 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MVIQLTPKPK VVFISSLFLC FLNKVPSIQL TSKKPNHRVS APNKNKILNK VPSISSSSSP 60 SHSQVQKRSL ITMEEVWKDI NLASIHHLNH HSQHPQHNHE PRFRSHNHQN QNPNSIFLDF 120 LNRPLNQEPT IPTSLSGDAT TVTALFGSSP LAPPATVLSL NSSACFEFLD NQDPLVTSNS 180 NLHSHNHLTN VRSSDTPFEA LVTSTCFGKK RGQESNEGSG NRHHKRMIKN RESAARSRAR 240 KQAYTDELEL KVAHLKAENA RLKRQQDQLK KAAANQQPKK NTLQRSSSAL F |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in shoot apex. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980, ECO:0000269|PubMed:25661797}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013624815.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624815.1 | 0.0 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 1e-127 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A3P6B278 | 1e-170 | A0A3P6B278_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo3g156810.1 | 1e-138 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-95 | bZIP family protein |