PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013622519.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 421aa MW: 47793.5 Da PI: 6.1623

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013622519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.5	1.9e-51	27	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtd+elv++yLk+kv g+++++ ++i +vdiyk+ePwdL +++k++++ewyf++ dkky +g r nr+t+ gyWkatgkd+e+ XP_013622519.1 27 LAPGFRFHPTDDELVSYYLKRKVLGRPVRF-DAIGDVDIYKYEPWDLAvfSRLKTRDQEWYFYCALDKKYGNGARMNRSTNIGYWKATGKDREIR 120 579**********************999.99**********8544899999********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ g+kktLvf++grap+g +t+Wvmheyrl XP_013622519.1 121 R-DDQILGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154 9.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-58	20	178	IPR003441	NAC domain
PROSITE profile	PS51005	55.318	27	178	IPR003441	NAC domain
Pfam	PF02365	3.2E-26	29	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MDRGSVAVES SPSSATAPST AVAATALAPG FRFHPTDDEL VSYYLKRKVL GRPVRFDAIG 60 DVDIYKYEPW DLAVFSRLKT RDQEWYFYCA LDKKYGNGAR MNRSTNIGYW KATGKDREIR 120 RDDQILGMKK TLVFHSGRAP DGLRTNWVMH EYRLVDYETE SNGNLVQDAY VLVKVFHKKN 180 IGPPSANRYA PFIEEEWADD GVVRVRAEPL PLANGNNQMD QSESKELINI NETPREVTPV 240 DMEVNHQENA LKPQENNNNN NHCDEDEKAL KREHADKVER PPPPPLPLLQ YKRRRQNESN 300 NKNSSRTTQE SSTTTTLISS SAAAAATSTA ISALLEFSLM DISEKKPLHK EGSHPTPLPS 360 HEEKLNDLYK EIHEMSVERE TFKLEMMSAE AMISILQSRI DALRQENDEL KKNSEKGQAT 420 L

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MDRGSVAVES SPSSATAPST AVAATALAPG FRFHPTDDEL VSYYLKRKVL GRPVRFDAIG  60
DVDIYKYEPW DLAVFSRLKT RDQEWYFYCA LDKKYGNGAR MNRSTNIGYW KATGKDREIR  120
RDDQILGMKK TLVFHSGRAP DGLRTNWVMH EYRLVDYETE SNGNLVQDAY VLVKVFHKKN  180
IGPPSANRYA PFIEEEWADD GVVRVRAEPL PLANGNNQMD QSESKELINI NETPREVTPV  240
DMEVNHQENA LKPQENNNNN NHCDEDEKAL KREHADKVER PPPPPLPLLQ YKRRRQNESN  300
NKNSSRTTQE SSTTTTLISS SAAAAATSTA ISALLEFSLM DISEKKPLHK EGSHPTPLPS  360
HEEKLNDLYK EIHEMSVERE TFKLEMMSAE AMISILQSRI DALRQENDEL KKNSEKGQAT  420
L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-44	21	180	9	170	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269\|PubMed:25578968}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013622519.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC966753	0.0	KC966753.1 Brassica napus NAC transcription factor 51 (NAC51.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013622519.1	0.0	PREDICTED: NAC domain-containing protein 53-like isoform X1
Swissprot	Q9SQX9	0.0	NAC50_ARATH; NAC domain containing protein 50
TrEMBL	A0A0D3BAK8	0.0	A0A0D3BAK8_BRAOL; Uncharacterized protein
STRING	Bo3g062710.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1780	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.1	0.0	NAC domain containing protein 50

Publications ? help Back to Top
Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990]