PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622434.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 436aa    MW: 48748.7 Da    PI: 7.1287
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.6e-52131411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+G+rF+Ptdeelv +yL++k++g++ ++ ++i+e+di+k+ePwdLp  +++k++++ew+fF++ d+ky++g+r+nr+t +g Wkatgkd++++
  XP_013622434.1  13 LPVGLRFRPTDEELVRYYLRRKINGQDDDV-KAIREIDICKCEPWDLPdfSAIKTKDSEWFFFCPLDRKYPNGSRQNRSTIAGHWKATGKDRKIK 106
                     799************************999.89**************96448899999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s k++++glk+tLvf++grapkg++t+Wvmheyr+
  XP_013622434.1 107 SGKNNVIGLKRTLVFHSGRAPKGTRTNWVMHEYRA 141
                     *99******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5811164IPR003441NAC domain
PROSITE profilePS5100555.60613164IPR003441NAC domain
PfamPF023653.2E-2614140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MNQNIKELSL DSLPVGLRFR PTDEELVRYY LRRKINGQDD DVKAIREIDI CKCEPWDLPD  60
FSAIKTKDSE WFFFCPLDRK YPNGSRQNRS TIAGHWKATG KDRKIKSGKN NVIGLKRTLV  120
FHSGRAPKGT RTNWVMHEYR ATEQDLSGTN PGQNPFVICK LFKKQDPSLV DEAASSPTSS  180
PNETKAVAKA QGVKPESSLV ISGNSHNGAC REATTSKLGD LDWLSFPELE SLTVFSPLHE  240
LGSSSFNAFL QPSSSDFSGN HDNTFRIQTQ YGTNEEDTDV SRFLNSVLDF QDDLDLDQDF  300
VFPSEFDGAV PDQTAPAYQQ QRSAGDMSDD VSRTGIKLQP RQEQPSGCST DYIIHGNAAR  360
RLRLQIIKRE EVEDTDGEAL KKGKLMGSKN RTGFLYKKIM SVRCSYGGLF RAAVVAVLFL  420
ISVCSLTTDF RASVLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4631657166NO APICAL MERISTEM PROTEIN
1ut4_B2e-4631657166NO APICAL MERISTEM PROTEIN
1ut7_A2e-4631657166NO APICAL MERISTEM PROTEIN
1ut7_B2e-4631657166NO APICAL MERISTEM PROTEIN
3swm_A2e-46316510169NAC domain-containing protein 19
3swm_B2e-46316510169NAC domain-containing protein 19
3swm_C2e-46316510169NAC domain-containing protein 19
3swm_D2e-46316510169NAC domain-containing protein 19
3swp_A2e-46316510169NAC domain-containing protein 19
3swp_B2e-46316510169NAC domain-containing protein 19
3swp_C2e-46316510169NAC domain-containing protein 19
3swp_D2e-46316510169NAC domain-containing protein 19
4dul_A2e-4631657166NAC domain-containing protein 19
4dul_B2e-4631657166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.144660.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves and stems. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622434.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413550.0KP641355.1 Brassica napus NAC transcription factor 62-3.1 (NAC62-3.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622434.10.0PREDICTED: NAC domain-containing protein 62-like
RefseqXP_013622435.10.0PREDICTED: NAC domain-containing protein 62-like
SwissprotQ9SCK60.0NAC62_ARATH; NAC domain-containing protein 62
TrEMBLA0A0D3BG190.0A0A0D3BG19_BRAOL; Uncharacterized protein
STRINGBo3g109540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.10.0NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]