PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622099.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 305aa MW: 34039 Da PI: 4.7413 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 71 | 124 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA+++gL+ rqV +WFqNrRa++k XP_013622099.1 71 KKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQEIGLQPRQVAIWFQNRRARWK 124 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.6 | 1.2e-41 | 70 | 162 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE++Fe ++kLeperKv+la+e+glqprqva+WFqnrRAR+ktkqlE+dy +Lk+++d+lk+++++L++++++L++e+k+ XP_013622099.1 70 EKKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQEIGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDSLKRSRDSLQRDNDSLHAEIKQ 162 69****************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.42E-19 | 61 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.556 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.5E-18 | 69 | 130 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.43E-18 | 71 | 127 | No hit | No description |
Pfam | PF00046 | 8.4E-16 | 71 | 124 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-20 | 73 | 133 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-5 | 97 | 106 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 101 | 124 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-5 | 106 | 122 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-17 | 126 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MKRSRGSSDS LSGFLPICHP ATDNQLSPRP TATGFLYSGS GDHSPMFDCL GDGSLEDITV 60 GHASSTAATE KKRRLSVEQV KALEKNFEID NKLEPERKVK LAQEIGLQPR QVAIWFQNRR 120 ARWKTKQLER DYGVLKSNFD SLKRSRDSLQ RDNDSLHAEI KQLRAKLNVD GISRSSSNAS 180 TEENVLVKAD ETVMPSNEVL ELNQRPLPPP PHIPTEAPAL ELEYEMLSIF PRAEIFREDP 240 ADSSDSSAIL NDDYSPTAAE AAPATAVEMS TMGCFGQFVK MEEHEDLFSG EEACKLFADN 300 EQWYC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 126 | RRARWKTKQ |
2 | 139 | 144 | DSLKRS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Localized primarily to the hypocotyl of germinating seedlings. {ECO:0000269|PubMed:12678559}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622099.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353247 | 1e-149 | AK353247.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-D07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622099.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-5-like | ||||
Swissprot | P46667 | 1e-156 | ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | A0A0D3BEU2 | 0.0 | A0A0D3BEU2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AUV3 | 0.0 | A0A3P6AUV3_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g099330.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12986 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.1 | 1e-146 | homeobox protein 5 |
Publications ? help Back to Top | |||
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