PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619569.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 530aa    MW: 59467.2 Da    PI: 8.9757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12355400555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L+ A +++ sLq
  XP_013619569.1 355 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTIAKDHLTSLQ 400
                     8899********************97.....8*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-15344414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.269350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-12352400No hitNo description
Gene3DG3DSA:4.10.280.104.5E-14354418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-10355400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-13356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MDAIFLTDDP NTRKQLIGSL AHSFGCIYVS LWSYYFPRPS NYLISFDGYY NEASHEPSTS  60
TGSLARRLFH EYRQSVIPLQ NGHIPSMAFM NNLPYLEIQT QDIQRLASND AQRLFYQEAR  120
IQTVIFMGCR SGEIELGLTY DAANMKVEAS LRDWFPEDFS RKTSPVNSDY LRPPPPPSSS  180
SSSLRSLDSP QNASEYSSLL FPLIPKPSTT TDAVNVPLHT LLAPVTTAET TNNMIHQRQQ  240
EPLFRNRERE EEVMTQAILA VLSTSSSPSS PHRKGKATAF KRYYCVASGG GVSGRAPQPP  300
SVRRQSMMKR AISFYNRLNI NWRERFPREN ATGGGSDGIG GSGGGRGPTA TQLHHMISER  360
KRREKLNESF QALRSLLPPG TKKDKASVLT IAKDHLTSLQ GDISKLLERN RELEAKLAGE  420
REMENFLQAD ERFNVRIIHI PESTSRERVL DLRIAHRGDN IGADDLIIRL LEFLKQINNV  480
SLVSIDGKTR AREDGVTSVV LVSLRLKIEG ECDESAFQEA IRRVVADLAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358363ERKRRE
2359364RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619569.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619569.10.0PREDICTED: putative transcription factor bHLH041
RefseqXP_013673259.10.0putative transcription factor bHLH041
RefseqXP_022569086.10.0putative transcription factor bHLH041
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A078H7P50.0A0A078H7P5_BRANA; BnaC02g11970D protein
TrEMBLA0A3P6DFR40.0A0A3P6DFR4_BRAOL; Uncharacterized protein
STRINGBo2g032920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]