PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013613166.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 466aa MW: 51659.4 Da PI: 4.4789 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111 | 8.5e-35 | 28 | 120 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d +++e++sws+ +nsfvv+d ef+k LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +++k+ll+ XP_013613166.1 28 FLSKTYDMVDDLSTNEVVSWSSGNNSFVVWDVPEFSKVFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRDQKQLLKG 113 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+ks+ XP_013613166.1 114 ITRRKSS 120 ****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.18E-33 | 23 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.0E-57 | 24 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.4E-37 | 24 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 9.0E-19 | 28 | 51 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-29 | 28 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.0E-19 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 67 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.0E-19 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MEPVLEPAPS VNSNPSPIPP PINSVPPFLS KTYDMVDDLS TNEVVSWSSG NNSFVVWDVP 60 EFSKVFLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRDQKQL LKGITRRKSS 120 HVQQQNQQQT QVENSSLAPC VEVGKCGIAE EEVERLERDK NVLMQELVRL RHQQQATEHQ 180 LKDAVQKVQA MEQRQQQMMS FLAKVVQSPG FLNQLVAQQS SNDGDRQIQG SSNKKRRLPG 240 EEANDVDRQI VKYQPSINEA AQTMLRQFLN MSSSNECESV SNSLNSSNTV SGVTLPEVSP 300 DSAYSATNQV PEAGLAHHPQ AGLVQPNLGP SPAAASWSPE SECKTGNGEC LDPIMAALGG 360 SLEMEGDAVS PKGEGEMKEL LVSQLPGVQD PFWEQFFADE APVSGDAEET ISGSVENNDL 420 AMEQELSEWT RDQQQVNHIT EQMGFLSSET HGGKNEKHLL CIDVLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-24 | 23 | 120 | 15 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013613166.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189501 | 0.0 | AC189501.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB087B10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606095.1 | 0.0 | PREDICTED: heat stress transcription factor A-1b-like isoform X1 | ||||
Refseq | XP_013613166.1 | 0.0 | PREDICTED: heat stress transcription factor A-1b-like isoform X1 | ||||
Refseq | XP_013614420.1 | 0.0 | PREDICTED: heat stress transcription factor A-1b-like isoform X1 | ||||
Swissprot | O81821 | 0.0 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | A0A0D3EEX6 | 0.0 | A0A0D3EEX6_BRAOL; Uncharacterized protein | ||||
STRING | Bo00967s020.1 | 0.0 | (Brassica oleracea) | ||||
STRING | Bo9g151630.1 | 0.0 | (Brassica oleracea) | ||||
STRING | Bo9g161770.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 0.0 | heat shock factor 3 |
Publications ? help Back to Top | |||
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