PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609991.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 346aa MW: 37839.3 Da PI: 7.8527 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.0004 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_013609991.1 137 YQCKTCDRTFPSFQALGGHRASH 159 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00044 | 213 | 235 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H XP_013609991.1 213 HECGVCGAEFTSGQALGGHMRRH 235 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.78E-8 | 136 | 159 | No hit | No description |
Pfam | PF13912 | 2.0E-12 | 136 | 161 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.471 | 137 | 164 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 137 | 159 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.78E-8 | 208 | 235 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.0E-4 | 211 | 237 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.5E-11 | 212 | 237 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.951 | 213 | 237 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.054 | 213 | 235 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 215 | 235 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MEAFEEAIAA SKEQSLIFKG KRTKRQRPQS PIPFSIISPP IVSSHAHDIQ EESKKDGVIT 60 SSSSSASWSS NNNATLKAEE DEEEQEIANC LILLSQGHSL PLPNHEANNN NTYRFSSRRF 120 LETSSSNGGD KAGYYVYQCK TCDRTFPSFQ ALGGHRASHK KPKATLSSYS NIDVKKNIYE 180 SNAVSLVTTS TIYKNNNNRS LAVYGKAGSN KVHECGVCGA EFTSGQALGG HMRRHRGAVV 240 IAAAPVTTVT VATAAANTEL SLSSMSFDQI SDGQDHLVMP ATKRAKKTVV SLDLDLNLPA 300 PEDENRVNGF TFALKQKQEQ EHQPTMQREE PKCLLMSAPT LVDCHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609991.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609991.1 | 0.0 | PREDICTED: zinc finger protein ZAT5 | ||||
TrEMBL | A0A0D3EHW3 | 0.0 | A0A0D3EHW3_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g180060.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2231 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-154 | C2H2 family protein |