PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013608954.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 409aa MW: 44951.9 Da PI: 6.34

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013608954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00054	270	305	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_013608954.1 270 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 305 5556788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	255	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-10	265	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.45E-5	265	309	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.0E-7	270	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MNRGVLESSP VQQLMAPGNP NWWNASGSMR PPQPLMGHQH GPLPPQMTPN NYVRPQMMPT 60 LLPPFMPYPA TSSSSSSSPS LPNNPNLSSW LESNDLPPES WSLSQLLLGG LMMGEDERLE 120 MMNHHNHHVE QQHHNFQGKM GLENWEEQVL SHQQASMGVD DIKQESNINN SNGYLTPSPN 180 SPPNKSCVST ITTTSLNSND DNNNNNNNNN SSMLDFSSIH NGLNLSEGRH IPPDRSSECN 240 SLEIGGSTNK KPRLQPSPSS QSTLKVRKEK LGGRIAALHQ LVSPFGKTDT ASVLSEAIGY 300 IRFLQSQIEA LSHPYFGTTA SGNMRHQQLL QGDRNCLFPE DPGQLLNDQC MKRREASFSS 360 TETQNANEEP KKDLRSRGLC LVPISCTLQV GSDNGADYWA PALGSAGFH

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MNRGVLESSP VQQLMAPGNP NWWNASGSMR PPQPLMGHQH GPLPPQMTPN NYVRPQMMPT  60
LLPPFMPYPA TSSSSSSSPS LPNNPNLSSW LESNDLPPES WSLSQLLLGG LMMGEDERLE  120
MMNHHNHHVE QQHHNFQGKM GLENWEEQVL SHQQASMGVD DIKQESNINN SNGYLTPSPN  180
SPPNKSCVST ITTTSLNSND DNNNNNNNNN SSMLDFSSIH NGLNLSEGRH IPPDRSSECN  240
SLEIGGSTNK KPRLQPSPSS QSTLKVRKEK LGGRIAALHQ LVSPFGKTDT ASVLSEAIGY  300
IRFLQSQIEA LSHPYFGTTA SGNMRHQQLL QGDRNCLFPE DPGQLLNDQC MKRREASFSS  360
TETQNANEEP KKDLRSRGLC LVPISCTLQV GSDNGADYWA PALGSAGFH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013608954.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488634	0.0	AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY081316	0.0	AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
GenBank	BT000121	0.0	BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608954.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X1
Swissprot	Q8S3D1	0.0	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A0D3A3J9	0.0	A0A0D3A3J9_BRAOL; Uncharacterized protein
STRING	Bo1g016710.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]