PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013608183.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 576aa MW: 64260.4 Da PI: 6.9846 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.6 | 7.1e-14 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ede+l +v++ G g+W+++ + g+ R++k+c++rw ++l XP_013608183.1 28 KGPWTAAEDEILSVYVRENGEGNWNAVQKNTGLVRCGKSCRLRWANHL 75 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 9.8e-15 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T +E+ l++++++qlG++ W++ a+ ++ gRt++++k++w++ XP_013608183.1 81 KGSFTGDEERLIIQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 124 789*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.483 | 23 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-12 | 27 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.66E-27 | 27 | 122 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-12 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-20 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-9 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 24.32 | 76 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-15 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 81 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.50E-11 | 83 | 126 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-24 | 83 | 128 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 576 aa Download sequence Send to blast |
MIMYGGEIEK AGGSANHMSN GGGVVLKKGP WTAAEDEILS VYVRENGEGN WNAVQKNTGL 60 VRCGKSCRLR WANHLRPNLR KGSFTGDEER LIIQLHAQLG NKWARMAAQL PGRTDNEIKN 120 YWNTRLKRLQ RQGLPLYPPD IIPNHQLHPH PHHHQQNHHH QQHQHQQMYF QQQSSQPNTP 180 SSSPLPSPTP INANPSSSFT FHSTNASTAY LLHPLSPHTP TTPQTPSQLS STPPPPPLSS 240 PLSSPRNNQY PTLPLFTFPS SQINNNNNNT NFTFPRPPPL LQPPSSLLAK RYNNSNTPLN 300 CINRVSTAPF SPVSRDSYTS FLTLPYSSPT AQTATYHNTN NNYSSFSLNP SPSSYPTTTS 360 SPSFLHSQYT PNYSSTSFHN NPVYSMKQEF PSNQIPQIGV FNNVNNFTDN EKQNNTNLHR 420 RSISCSLLED VLVEAEALAG GDGDRPSKRR QLTASPPNHH NNNNNDNDNF FSVSFEQYDS 480 SENICSLQDL KPKEEESLQM NTMQDDIAKL LDWGSDSGEI SNGQSSVLTD DNLVLDVHQL 540 NSLFPADSTA AETRTNDEQN NNDKINCSWD NLHGVS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 9e-28 | 25 | 128 | 1 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 9e-28 | 25 | 128 | 1 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the pollen tube nucleus during pollen tube growth through the pistil. {ECO:0000269|PubMed:23791732}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen grains and pollen tube (PubMed:23791732, PubMed:24278028). Mostly expressed in mature pollen grains, and, to a lower extent, in inflorescences and siliques (PubMed:24278028). {ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013608183.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608183.1 | 0.0 | PREDICTED: transcription factor MYB26-like | ||||
Swissprot | Q94FL7 | 0.0 | MY120_ARATH; Transcription factor MYB120 | ||||
TrEMBL | A0A0D3EB75 | 0.0 | A0A0D3EB75_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g119060.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9939 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G55020.1 | 1e-83 | myb domain protein 120 |
Publications ? help Back to Top | |||
---|---|---|---|
|