PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607504.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 383aa    MW: 40680.7 Da    PI: 4.2865
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-05168190123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C+k F+++  L  H++ H
  XP_013607504.1 168 FTCPTCKKGFPSSQALGGHQNAH 190
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-6165196No hitNo description
Gene3DG3DSA:3.30.160.603.7E-4166195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.572168195IPR007087Zinc finger, C2H2
PfamPF139123.7E-7168192IPR007087Zinc finger, C2H2
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSSSSSSVVQ VVSSASSPAP QPEKCNDVTV AVEESIEKAT ENQAVSSAGS SAAPQPEKSN  60
DVTVAVEEAK EMAAENQVVS SAGSSAAPPQ PNDIIVAVEG DKEMATENQI VPYTGSPAPQ  120
PEQCTDIVIV ATENNDPGSE NPSLIGSGAV PPGSQILQLY PPRSNKIFTC PTCKKGFPSS  180
QALGGHQNAH KQEREWERKR KNMEQEYPGF AFLNPNIDNP LMFFLGGYSE DALTHENHLG  240
IPLDDAFKRR FARNHPSVNN GFSDMNITAV PRVAPTGFFA GNTSTTNGSS SGGLGPRPPY  300
NSYPPMLPRN FPPFPPPQTN NLPRGLYPQQ ENVLNEVNFI SEIGKGKNIM EIDDNDDDAD  360
AGAGADDGPI EGTSKSWGAD LSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607504.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607504.10.0PREDICTED: uncharacterized protein LOC106314117
RefseqXP_022571266.10.0uncharacterized protein LOC111213724
TrEMBLA0A0D3E1490.0A0A0D3E149_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DNX50.0A0A3P6DNX5_BRAOL; Uncharacterized protein
STRINGBo9g010540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.16e-57C2H2 family protein