PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013607504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 383aa MW: 40680.7 Da PI: 4.2865 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.6e-05 | 168 | 190 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k F+++ L H++ H XP_013607504.1 168 FTCPTCKKGFPSSQALGGHQNAH 190 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.59E-6 | 165 | 196 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 166 | 195 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.572 | 168 | 195 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.7E-7 | 168 | 192 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 170 | 190 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 383 aa Download sequence Send to blast |
MSSSSSSVVQ VVSSASSPAP QPEKCNDVTV AVEESIEKAT ENQAVSSAGS SAAPQPEKSN 60 DVTVAVEEAK EMAAENQVVS SAGSSAAPPQ PNDIIVAVEG DKEMATENQI VPYTGSPAPQ 120 PEQCTDIVIV ATENNDPGSE NPSLIGSGAV PPGSQILQLY PPRSNKIFTC PTCKKGFPSS 180 QALGGHQNAH KQEREWERKR KNMEQEYPGF AFLNPNIDNP LMFFLGGYSE DALTHENHLG 240 IPLDDAFKRR FARNHPSVNN GFSDMNITAV PRVAPTGFFA GNTSTTNGSS SGGLGPRPPY 300 NSYPPMLPRN FPPFPPPQTN NLPRGLYPQQ ENVLNEVNFI SEIGKGKNIM EIDDNDDDAD 360 AGAGADDGPI EGTSKSWGAD LSL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013607504.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607504.1 | 0.0 | PREDICTED: uncharacterized protein LOC106314117 | ||||
Refseq | XP_022571266.1 | 0.0 | uncharacterized protein LOC111213724 | ||||
TrEMBL | A0A0D3E149 | 0.0 | A0A0D3E149_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DNX5 | 0.0 | A0A3P6DNX5_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g010540.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G27880.1 | 6e-57 | C2H2 family protein |