PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603808.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 385aa    MW: 44058.6 Da    PI: 5.3987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.7e-12207249754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er+RR+riN+++  Lr l+P       +K++K  +L  Av+YI++L
  XP_013603808.1 207 HSERKRRERINQRIYALRALVPVI-----TKMNKNGTLSDAVDYISEL 249
                     57*********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.8E-179156IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.50E-12198254No hitNo description
SuperFamilySSF474592.49E-15199262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.205200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-13206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-13207263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9207249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMRGVERVKE FLRPLVDSRD WDFCVIWKLG DDPSRFIEWV GCCCSGSYID KNIKHENVEE  60
EEEERQKMGS ICRDEHNKHH IRSLACEALC RFPLFIPLYP GIHGEVVMSN SPKWLVNSGP  120
GSKQDIFRTR VLVPVRDGLV ELFSFTMKPV DESMVDLIIS RCNAFFEPFT EQTLPCGEQA  180
PCLMNNKEEG VVMQDLTKEN FKSKNLHSER KRRERINQRI YALRALVPVI TKMNKNGTLS  240
DAVDYISELL VEKQKLEDEL SGINEVECRA EEEAVIANPE AEKVSSKLNK NVNNEVNLEV  300
HETGEGDFLI RVAQEHKQDG FKRLIEAVDS CGLEIINVNV TRLDLTVMTI LNVKANKYGI  360
TREDLRDLLF KMIITSVAVS VKHST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213ERKRRE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603808.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603808.10.0PREDICTED: transcription factor bHLH90-like
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLA0A3P6GTD70.0A0A3P6GTD7_BRAOL; Uncharacterized protein
STRINGBo8g109390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein