PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013598295.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 567aa MW: 64567 Da PI: 4.9074 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 313 | 356 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR+++N+++ Lr+l+P +Kl+ a+iL A++Y+k+Lq XP_013598295.1 313 LAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 356 68*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.6E-17 | 10 | 148 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 5.53E-14 | 305 | 358 | No hit | No description |
PROSITE profile | PS50888 | 16.488 | 306 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-17 | 309 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-15 | 312 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-16 | 313 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-10 | 313 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MESTMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWIG CCCGGTQLIE ENGTEEFSIE 60 GCRDVMFHHP RTKSCEFLDH LPSSIPLDSG IYAETLLTNQ TGWLSESSEP GFMQETICTR 120 VLIPIPGGLV ELFATRHVAE DQNVVDFVMG NCNMLMDETV TINMMVADEV ESKPYGMLCG 180 DIHQKGSKDE EMMNLPSPYD ISTDQMRVNF LPQMSEYEAQ QHLKVKSDYH HQDLGYLPEN 240 GSKEMMGMNP FSTEDGMSVM GEPSLLVNEQ QIANDKEMNE NGTGSDCSDQ IDDEDDPKYK 300 KKTGKHSQAK NLLAERRRRK KLNDRLYALR SLVPRITKLD RASILGDAIN YVKELQIEAK 360 ELQDELEENS ETEDGANRQR GGVSLNGTVV TGFHPGISCN SNVPNLKQDV DIENANDKGQ 420 EMEPQVDVAQ LDGREFFVKV ICEYKPGGFT RLMEALDSLG LEVTNANTTR FLSLVSNVFK 480 VEKTDSEMVP AEHVRNSLLE ITRNTSRGWH DDQMATGSIQ NEKNEVDYQH YDDHHHHSGH 540 HHLNDHQMNH RAQHHHHHQH INHYQNQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 299 | 320 | KKKTGKHSQAKNLLAERRRRKK |
2 | 314 | 321 | ERRRRKKL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed a bud stage of 0.6-mm, shortly after microspore release from the postmeiotic tetrads. Later restricted within the tapetum, microspores and anther locule. Still visible within the haploid nuclei, each of which had migrated to the pollen cell wall prior to pollen mitosis I. Not expressed later. {ECO:0000269|PubMed:12535353}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in closed, post-meiotic buds, and, to a lower extent, in pre-meiotic buds. Detected in leaves, stems, and flowers. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013598295.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ511991 | 0.0 | AJ511991.1 Brassica napus mRNA for bHLH transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598295.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES | ||||
Swissprot | Q9ZVX2 | 0.0 | AMS_ARATH; Transcription factor ABORTED MICROSPORES | ||||
TrEMBL | A0A0D3D3M2 | 0.0 | A0A0D3D3M2_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g016210.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7589 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 0.0 | bHLH family protein |