PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596510.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 181aa    MW: 20043.4 Da    PI: 6.3586
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596510.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-183988255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_013596510.1 39 NFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTPEMAARAHDVAALAIKG 88
                    59****998.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.81E-353898No hitNo description
PfamPF008478.1E-123888IPR001471AP2/ERF domain
SMARTSM003805.5E-3939102IPR001471AP2/ERF domain
PROSITE profilePS5103222.6163996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-323997IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-213997IPR016177DNA-binding domain
PRINTSPR003675.0E-104051IPR001471AP2/ERF domain
PRINTSPR003675.0E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MQDSSLPQPE RNLRSPAPEK TLSSSKAKDD QKGVSKHPNF RGVRMRQWGK WVSEIREPKK  60
KSRIWLGTFS TPEMAARAHD VAALAIKGSS AHLNFPELAC HLPRPASADP KDIQAAATAA  120
AVEWKAQESP SSTVTSSMTS SSPADDAFSD LPDLLLDVND HKVDGFWDSF PYEEPFFMEN  180
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-173296672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596510.11e-131PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9SUK82e-93ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A0D3DEH91e-130A0A0D3DEH9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E6K91e-130A0A3P6E6K9_BRAOL; Uncharacterized protein
STRINGBo7g104770.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.13e-93ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]