PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013594912.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 357aa MW: 40187.5 Da PI: 7.1466 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.3e-05 | 198 | 217 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_013594912.1 198 FSCPLCFKTFNRYNNMQMHM 217 89*****************9 PP | |||||||
2 | zf-C2H2 | 13 | 0.00032 | 282 | 304 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ XP_013594912.1 282 FACRRCGKAFAVKGDWRTHEKNC 304 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 198 | 217 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.66 | 198 | 225 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 200 | 220 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.75E-6 | 268 | 302 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.9E-6 | 269 | 302 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 282 | 302 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MSDPACIFSN GFLDNYDYSF NYSTSLSHIY NSNGSFYSSN TTKINPNSTS PDSPPLREAL 60 PLLSLSPIHK HKAASVSHHE YYFMETTEQS STNFLDHDLG QCQETQHHDV TVDLHLGLTN 120 LGGDAIACGG GGSSSSDAIL DSTDQEHHHD LHQDRHQYPE VEVTLVSDHD GHGGVQRGIH 180 HHYWIPTPSQ ILMGPTQFSC PLCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTAML 240 RLSCYCCAPG CKNNIHHPRA RPLKDFRTLQ THYKRKHGAR PFACRRCGKA FAVKGDWRTH 300 EKNCGKLWYC SCGSDFKHKR SLKDHVKAFG NGHVPCFGND CFGDHEDEAA SDVEHQE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013594912.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311811 | 1e-177 | AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013594912.1 | 0.0 | PREDICTED: zinc finger protein WIP4-like | ||||
Refseq | XP_013682397.1 | 0.0 | zinc finger protein WIP4-like | ||||
Swissprot | Q8W030 | 0.0 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | A0A0D3ABZ7 | 0.0 | A0A0D3ABZ7_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g108560.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20880.1 | 0.0 | WIP domain protein 4 |
Publications ? help Back to Top | |||
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