PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013591325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27702.3 Da PI: 5.13 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.7 | 1.8e-07 | 63 | 116 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ n++Er RR r+ ++ +L +llP +s+ ++kK +i ++v YI +L XP_013591325.1 63 KKQERNANERLRRMRLHASYLTLGTLLPDQSSSSKKKWCAPSIMDRVVTYIPKL 116 67889************************88889999**************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.07E-9 | 57 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.956 | 62 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-7 | 62 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-4 | 63 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSDHQILESS LLDDLFHIPA ETIVEEFREK DDTFRAQSES KGKEVVIVLH DEDVHGSSSG 60 AAKKQERNAN ERLRRMRLHA SYLTLGTLLP DQSSSSKKKW CAPSIMDRVV TYIPKLLNEV 120 EELTIRKKKL AEDIESEKSQ RLERQDPQTR AISVLELGES GDEVVVQISM KKEKEDEFSN 180 LLNVMEMQGS SILSASTSLV CRDQRVVCYN LHVKMDEKPC EGDDYITVLK NNITSSLSDN 240 TKCK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013591325.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591325.1 | 1e-180 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106299862 | ||||
Swissprot | F4I8F9 | 1e-103 | BH160_ARATH; Transcription factor bHLH160 | ||||
TrEMBL | A0A3P6HDU7 | 1e-167 | A0A3P6HDU7_BRAOL; Uncharacterized protein | ||||
STRING | Bo01532s010.1 | 1e-150 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10558 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71200.1 | 1e-105 | bHLH family protein |
Publications ? help Back to Top | |||
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