PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591088.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 536aa    MW: 60364.6 Da    PI: 6.3172
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.75e-1422991296
                    HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3 12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ++++ ++p  f+++h + k++s++l+l++  s rsWev+l  ++++    +++GWk+F   +g++  D++ F++dg++ f  +v  
  XP_013591088.1 22 QNSIPMIPDLFISNHVKGKTQSTKLKLTSdVSDRSWEVEL--DGHR----FARGWKQFSVHHGVRNDDVLSFRHDGDMVF--HVAP 99
                    556679*********66678999****998999*******..8887....9***********************999998..7765 PP
2B365.77.1e-21183275599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++s++l ++++ +++kfa+ +g+k ++  ++ l +e+g+sW+++l+++k+ g+ ++ +GW +F++ ng+k+g  + Fkl++ +++++v++++ +
  XP_013591088.1 183 HVTSSNLGRNQMGISNKFARPNGLKDRQ-CEIDLLNEEGKSWTLELRHNKTTGQSYMCRGWTSFCQGNGIKAGSACRFKLVK-NGTKPVLQLCPN 275
                     68999*****************999765.6******************99999999999*********************98.788899999875 PP
3B336.58.4e-12315405699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvfrk 99 
                      ++++l++g+l+lp  f +e+g+++++  ++tl +++g +W++ l   k++g+++++ G k+  +a g+k +gD++++ +++  ++++ +k+++k
  XP_013591088.1 315 FKPHMLRTGQLRLPTLFSRENGINEAG--EVTLVNKDGVEWKLHLVSVKGRGQFYIR-GFKDCFRAIGIKkVGDSFTLDVVR-GGTSPILKICSK 405
                     67899*****************99877..7***************999999999999.***********99********886.88889****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-158103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-1410103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.84211103IPR003340B3 DNA binding domain
CDDcd100174.17E-1013100No hitNo description
SMARTSM010195.7E-1215103IPR003340B3 DNA binding domain
PfamPF023622.2E-72795IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-21174275IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.493179275IPR003340B3 DNA binding domain
CDDcd100179.68E-19179274No hitNo description
SuperFamilySSF1019364.9E-20179277IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-26179276IPR003340B3 DNA binding domain
PfamPF023626.8E-20182275IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-7308405IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.754310406IPR003340B3 DNA binding domain
SMARTSM010195.3E-13310406IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-8313404IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-11314405IPR003340B3 DNA binding domain
CDDcd100174.82E-8316404No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MVDPVMVSSN NKPIFFIDLS GQNSIPMIPD LFISNHVKGK TQSTKLKLTS DVSDRSWEVE  60
LDGHRFARGW KQFSVHHGVR NDDVLSFRHD GDMVFHVAPF GRSFSHQIQF ISSTSEDKND  120
DDEHNIFDDD VYDEEEEHAD VGDDDDDDDD KDSASEEELF PSSKKKAITE TETSLEDSYL  180
VAHVTSSNLG RNQMGISNKF ARPNGLKDRQ CEIDLLNEEG KSWTLELRHN KTTGQSYMCR  240
GWTSFCQGNG IKAGSACRFK LVKNGTKPVL QLCPNTSTIL HKKRDVPETD GDEIEYEDCL  300
ETPQMNQNRT VAIEFKPHML RTGQLRLPTL FSRENGINEA GEVTLVNKDG VEWKLHLVSV  360
KGRGQFYIRG FKDCFRAIGI KKVGDSFTLD VVRGGTSPIL KICSKIKEAS LDGNQTTNRR  420
PSRMIQAPRA EEEMETRVQK KARVSAGGGS SRRTRASNKL SVGPANLQHK KPLEPCSISD  480
QVNKVRQSIV HTLTDVRQFR SELEIKEQNL ETSLLEIDAL GEKIQGISKF FNVNQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591088.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892170.0AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591088.10.0PREDICTED: putative B3 domain-containing protein REM4 isoform X1
SwissprotQ9SB790.0REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLA0A0D3A2T40.0A0A0D3A2T4_BRAOL; Uncharacterized protein
STRINGBo1g011090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]