PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 570aa MW: 64149.9 Da PI: 4.9345 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.6e-30 | 272 | 329 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +D y+WrKYGqK vkg+++prsYY+C+++gC+vkk+ver+a+d +++ +tY g+H h XP_013590971.1 272 NDDYRWRKYGQKIVKGNPNPRSYYKCSHKGCNVKKHVERAADDLRMLLVTYYGKHGHA 329 7******************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-31 | 257 | 331 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.156 | 266 | 331 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-27 | 266 | 331 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-34 | 271 | 330 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-24 | 272 | 328 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MSDYGDGNFM DMVSSNWAPP PSTSLSDNGL NPISDIFLQT NQSKQRPGLV DRVAARIGRN 60 IPPIRTDNLS PFAVSKNPKT VPFGIEISPG LSSSVMLQST SHLINPYSFP NDEPPETVEN 120 SGDDHAKTMI FNNDVPYQPM HFDLPPQEDS NVIPALIPSH ESHVDPIGVP LVASFESEVA 180 DDTDTIKLMS LDDESESQDE EESNEDEDTD DPSKLGRKRR IDEEEDDDIA DEHEVKPSSP 240 KRRKYDEVSN MMTALRTSNV MLRMETEEDQ PNDDYRWRKY GQKIVKGNPN PRSYYKCSHK 300 GCNVKKHVER AADDLRMLLV TYYGKHGHAA PLTRSSSSSG PKNLSRSSVP ARLGRPPFSS 360 SSAAQDMRPF PYPSASAPRD MRRFGYPSAL APQAMRPFPS SLNPGVDMTH LYKTGLPKLP 420 RLPVNQNHGF MGQNAEPWVN QNHEFMGQNA EPWVKQNHGF MGQNDEPWVN QNHGFMGQND 480 EAWVNQNHGF MGQNDEAWVN QNHGFMGQND EPWLNQNHGF MGQNDEPWVN QNHVFMGQND 540 EPKTDHVIPD GTEVYKGLME RMLANLGLKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-22 | 262 | 331 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-22 | 262 | 331 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590971.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590971.1 | 0.0 | PREDICTED: probable WRKY transcription factor 10 | ||||
TrEMBL | A0A0D3CR23 | 0.0 | A0A0D3CR23_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g034690.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20376 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55600.1 | 1e-42 | WRKY DNA-binding protein 10 |