PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590878.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 283aa    MW: 32119.9 Da    PI: 9.6561
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-18115165156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g+
  XP_013590878.1 115 SHYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRGH 165
                     79*******************......55**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-15115172IPR016177DNA-binding domain
CDDcd000183.24E-11115171No hitNo description
PfamPF008474.7E-10115165IPR001471AP2/ERF domain
SMARTSM003801.1E-30116178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-17116171IPR001471AP2/ERF domain
PROSITE profilePS5103217.24116172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLDLNLGTFS YYQEDHDRRV PLISTAGEEE SNLSLYSSSS TDSATDKPFI TFGILKRDGD  60
VVPLKEAEGL FPVADARRNI EFSGDDRHWL NLSSLHRSNQ QMVKKGRRGP RSRSSHYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAYA AARAYDRAAI KFRGHDADIN FVVDDYRQDM  180
DKMKNLDKVE FVQTLRRESA SFGRGSSKYK GLTLQKCTQF KNHHDQIHLF QNRGWDAAAI  240
KYNELGKGVM KFGSHIKGNA HSDLELSLGI SSSSGNTKLT TCK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590878.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5762750.0AY576275.1 Arabidopsis thaliana AP2 domain transcription factor (SMZ) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590878.10.0PREDICTED: AP2-like ethylene-responsive transcription factor SMZ
SwissprotQ6PV681e-121SMZ_ARATH; AP2-like ethylene-responsive transcription factor SMZ
TrEMBLA0A0D3CTW90.0A0A0D3CTW9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H1J40.0A0A3P6H1J4_BRAOL; Uncharacterized protein
STRINGBo6g068410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108581832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54990.11e-116AP2 family protein
Publications ? help Back to Top
  1. Gras DE, et al.
    SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
    J. Exp. Bot., 2018. 69(3): p. 619-631
    [PMID:29309650]