PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013588813.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 354aa MW: 39556.2 Da PI: 6.1628

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013588813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.2e-14	165	212	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L+ XP_013588813.1 165 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKELE 212 79***********************9.....8**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.85	162	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-11	165	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-14	166	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-14	166	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.51E-5	175	214	No hit	No description
CDD	cd04873	2.18E-7	251	319	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MCSKKEEVES SGAMNNIQNY PNNLFFHQLV SHHHHQEPSQ SETFRAPGYN VESGFTIFSH 60 DSVSPIWPTS TQPQFDPFTP PTPQASFYES FFNRSRAHHQ GLQFGYEGFD GGTSATHHHQ 120 EQLRILSEAL GPVVQAGSGP FGLQGKLGKM TAQEIMDAKA LAASKSHSEA ERRRRERINN 180 HLAKLRSILP NTTKTDKASL LAEVIQHVKE LERETSVISE TNLVPTESDE LKVAFTEEEE 240 TEDGRLVIKA SLCCEDRSDL LPDMIKTLKS MRLKTLKAEI TTAGGRVKNV LFVTGEESSG 300 EDMEDYCIGM IEEALKAVMG KCNVEESSSS VNAKRQRMSS HNPITIVEQQ QYHH

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MCSKKEEVES SGAMNNIQNY PNNLFFHQLV SHHHHQEPSQ SETFRAPGYN VESGFTIFSH  60
DSVSPIWPTS TQPQFDPFTP PTPQASFYES FFNRSRAHHQ GLQFGYEGFD GGTSATHHHQ  120
EQLRILSEAL GPVVQAGSGP FGLQGKLGKM TAQEIMDAKA LAASKSHSEA ERRRRERINN  180
HLAKLRSILP NTTKTDKASL LAEVIQHVKE LERETSVISE TNLVPTESDE LKVAFTEEEE  240
TEDGRLVIKA SLCCEDRSDL LPDMIKTLKS MRLKTLKAEI TTAGGRVKNV LFVTGEESSG  300
EDMEDYCIGM IEEALKAVMG KCNVEESSSS VNAKRQRMSS HNPITIVEQQ QYHH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	175	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013588813.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189291	0.0	AC189291.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026C23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588813.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	0.0	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0D3CXS8	0.0	A0A0D3CXS8_BRAOL; Uncharacterized protein
STRING	Bo6g095860.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-180	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]