PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013584279.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 335aa MW: 37152.6 Da PI: 6.4282 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.5e-08 | 256 | 296 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P +K++ a++L +A +Y+k L XP_013584279.1 256 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 296 69******************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.123 | 247 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-13 | 252 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.9E-13 | 253 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.26E-11 | 253 | 301 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.1E-12 | 255 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-6 | 256 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 335 aa Download sequence Send to blast |
MEGLESVYAQ AMYGMNRQNK IMEHQGSDLI WGGNELIPRE LCSSSFSSHQ LINPNLGSCF 60 MSDLGVIDEI QHQQHVGNRA ASIDPSSLEC LLSATTNTST EDDEGISALF SDCQTLWSFG 120 GGISSAESEN REITTDTTTK PKSLKRNRDE TGSHFRLVHH PQDDTEKGSF KLIYDENQTK 180 SKKPRTEKGG GSSNISFGHS ASLSDNAEPD AEAIAQMKEM IYRAAAFRPV NFGLETVEKP 240 KRKNVKISTD PQTVAARQRR ERISEKIRVL QTLVPGGTKM DTASMLDEAA NYLKFLRAQV 300 KALENLRPKL DPTNLSFSSP LFHPSFLPMQ NPNQI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 256 | 261 | RQRRER |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013584279.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF488617 | 1e-173 | AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AP001305 | 1e-173 | AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9. | |||
GenBank | BT020364 | 1e-173 | BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds. | |||
GenBank | CP002686 | 1e-173 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584279.1 | 0.0 | PREDICTED: transcription factor bHLH87 | ||||
Swissprot | Q8S3D2 | 0.0 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | A0A0D3CHK7 | 0.0 | A0A0D3CHK7_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g101160.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7960 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21330.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|