PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012573985.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28894.8 Da PI: 4.8521 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.8 | 2.2e-14 | 61 | 104 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr+++P+ + K++Ka+i + A+eYI++L+ XP_012573985.1 61 VSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIEYIQHLH 104 67*********************66......*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.545 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.14E-18 | 56 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-13 | 57 | 108 | No hit | No description |
SMART | SM00353 | 8.2E-16 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-17 | 60 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-12 | 61 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MENIGEEYKH YWETNMFLQT QELDRDGCGG SWGLDEAFSG YYDSSSPDGA ASSAVSSKNI 60 VSERNRRKKL NERLFALRSV VPNISKMDKA SIIKDAIEYI QHLHEQEKII QAEIMELESG 120 MPNNNNNNNI NPSNDFDQEL PILLRSKKKR TDQLYDCVTS TSFPIEVLEL RVTYMGENTI 180 VVSLTCSKRT DTMVKLCEVF ESLKLKIITA NITSFSGRLL KTVFIEANEE EKDLLQIKIR 240 TAIAALNDPL SPVSI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012573985.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139608 | 1e-138 | BT139608.1 Medicago truncatula clone JCVI-FLMt-13I5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012573985.1 | 0.0 | transcription factor bHLH35 isoform X1 | ||||
Swissprot | Q2HIV9 | 5e-94 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A1S3EDS0 | 0.0 | A0A1S3EDS0_CICAR; transcription factor bHLH35 isoform X1 | ||||
STRING | XP_004487998.1 | 1e-168 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 2e-85 | bHLH family protein |