PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012571554.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 34119.2 Da PI: 6.8979 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.9 | 1.8e-31 | 66 | 207 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+P+d e++ e+L++kv + + + +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ XP_012571554.1 66 LPAGVKFDPSDIEIL-EHLEAKVMYDVcklhplI---DefiqTLEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKVHtdeeg 155 799***********9.99*****99995554332...122222333336**********.666777788******************74444655 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ ++ ++g kk+Lv+y +r+ k+ekt+Wvmh+y+l XP_012571554.1 156 sETRWHKTGKTRAVFA-NSVVKGYKKILVLYtnyCNRQTKPEKTNWVMHQYHL 207 5778************.999***********55447999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-36 | 62 | 226 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.443 | 66 | 226 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-14 | 67 | 207 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MVRWCNTDSD HEERENELIT PSITPKLDNN KTDVTDHDEI QTIKCPSCGH NIEIKDQGGI 60 NELPGLPAGV KFDPSDIEIL EHLEAKVMYD VCKLHPLIDE FIQTLEGENG ICYTHPEKLP 120 GVNKDGQIRH FFHRPSKAYT TGTRKRRKVH TDEEGSETRW HKTGKTRAVF ANSVVKGYKK 180 ILVLYTNYCN RQTKPEKTNW VMHQYHLGSN EEEKDGELVV SKVFYQTQPR HSGNSIIVRD 240 SYEKVINNGI GHGKNATIPN NLTHVECYND PFTNYDHVHV GGHISESSQQ LIPNLRGAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012571554.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027366168.1 | 1e-154 | NAC domain-containing protein 73-like | ||||
Refseq | XP_027366178.1 | 1e-154 | NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-109 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A151SAN6 | 1e-151 | A0A151SAN6_CAJCA; NAC domain-containing protein 8 | ||||
STRING | AES63907 | 1e-150 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-111 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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