PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012567292.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 291aa    MW: 32633.4 Da    PI: 8.4718
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012567292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024128150123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_012567292.1 128 FSCNYCQRKFYSSQALGGHQNAH 150
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.77E-6125155No hitNo description
PROSITE profilePS5015711.427128155IPR007087Zinc finger, C2H2
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDLLKPGTYP SENLNLPCLE PSMDTQTHRK HKHDSSPHLV LDLSLSNKDS GDDYSTLTEK  60
IIGQTLPTSR PNFKSSEFIF SENQRVKDQK KGDGYSNHEL NLLNCFHTNL SESSSESSHE  120
NELDPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLARRG YKAGASGSSV DLGQRYTTTS  180
MASSLPSYGL CNKSLGIQVH SMINKPSFQT PFYGFCSNGC QRQHFDTQSA IGKFHVMAEN  240
EPSLSSEIQR VAMFPKRFVN EGFGGYLFGS NTSHLKSKQE NLQKLDLSLK L
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012567292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012567292.10.0zinc finger protein 3
TrEMBLA0A1S3DUX60.0A0A1S3DUX6_CICAR; zinc finger protein 3
STRINGXP_004515529.11e-172(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.15e-32zinc finger protein 3