PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100788.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | CAMTA | ||||||||
Protein Properties | Length: 929aa MW: 105167 Da PI: 7.2512 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 165.9 | 6.6e-52 | 30 | 147 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e k+rwl+++ei+aiL n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf XP_011100788.1 30 MEEaKARWLRPNEIHAILCNHKYFTVYVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTFV 124 45669****************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ XP_011100788.1 125 RRCYWLLDKSLEHIVLVHYRETQ 147 ********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.333 | 26 | 152 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.5E-77 | 29 | 147 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.0E-46 | 32 | 145 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 3.22E-9 | 382 | 467 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 1.30E-13 | 566 | 676 | No hit | No description |
SuperFamily | SSF48403 | 3.42E-16 | 567 | 679 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.1E-15 | 567 | 679 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 14.345 | 575 | 649 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.434 | 617 | 649 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 5.1E-6 | 617 | 646 | IPR002110 | Ankyrin repeat |
Pfam | PF00023 | 9.2E-5 | 618 | 648 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 3.72E-8 | 724 | 831 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.163 | 765 | 791 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 14 | 780 | 802 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.089 | 784 | 810 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0012 | 803 | 825 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.091 | 804 | 828 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.001 | 805 | 825 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 35 | 883 | 905 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.114 | 885 | 913 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 929 aa Download sequence Send to blast |
MENTGVRGRF VGSEIHGFRT LEDLDVGNMM EEAKARWLRP NEIHAILCNH KYFTVYVKPV 60 NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDN 120 PTFVRRCYWL LDKSLEHIVL VHYRETQELQ GSPATPVNSN SNSAGSDLSA TWPMSEESDS 180 AVDRVYYGST GSYLECHDSV TVKHHEQRLY EINTLEWDEL LVPDDPHRLI TRQQGTTAGF 240 ELQNQYQMNS YRINDDAPSN NKVSPECSTN SFSEPVAGRS SINYTSPNNM SYQTVEQDTI 300 VNSETMVSGL MPSGGAGSLY NLGKDGLQSQ DSFGRWVTHI IAESPESVDD HTLESSNLAG 360 HQSSTYPLMD SHDSSPLGPI FTITDVSPAW ALSTEETKIL VVGFFNEGQL PYSESKLYLA 420 CGDSLLPVDV VQAGVFRCLI PPQAPKLGNL YITFDGHKPI SQVLTFEIRA PVQPGTVSFE 480 NKTDWEEFQL QMRLAHLLFS SSKGLSIYST KLSPTALKEA KAFAQKTSHI SDGWLHMAKV 540 IEDTKMSFPQ AKDKLFELTL QNRLQEWLLE KVVAGCKISE RDEQGLGVIH LCSILGYTWA 600 VYPYSWSGLS LDYRDKFGWT ALHWAAYYGR EKMVATLLSA GAKPNLVTDP TSQNPGGCSA 660 HDLASKNGYD GLAAYLAEKA LVAQFDDMTL AGNVSGSLQT TTNETVNPGN FSEDELYLKD 720 TLAAYRTAAD AAARIQTAFR EHSLKIRTKV VESSNPELEA RNIVAAMKIQ HAFRNYETRK 780 KIVAAARIQH RFRTWKIRKE FLNMRRQAIK IQAMFRGFQV RRQYRKIVWS VGVLEKAILR 840 WRLKRKGFRG LQVQPAETPR EPNEESDVEE DFFQASRKQA EERVEQSVVR VQAMFRSKQA 900 QEAYRRMKLE HNKAKLEYEG LLHPDLQMG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100788.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100788.1 | 0.0 | calmodulin-binding transcription activator 5 isoform X1 | ||||
Refseq | XP_011100789.1 | 0.0 | calmodulin-binding transcription activator 5 isoform X1 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A022RYH3 | 0.0 | A0A022RYH3_ERYGU; Uncharacterized protein | ||||
STRING | Migut.G00093.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4565 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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